Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1149 89.7 5e-13 seq763 86.0 6e-12 >seq1149 Length=36903 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA--GTCCTCGAGTTGTTTACCGG 138478 |||||||| |||||||||||||| | || || |||| ||||| | || || |||| Sbjct 9635 GACTCCTTCTGAATGTTGTAGTC-CGCA-AGCGTGCGACCCTCCTCCAACTGCTTCCCGG 9692 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | | || | ||||| || |||||||| ||||| || ||||| ||| | || | ||| Sbjct 9693 CAAAAATCAACCGCTGCTGATCCGGAGGGATACCCTCCTTGTC-CTGAATCTTGGCCTTT 9751 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | ||||||| | | ||| ||||| | | | ||||| ||||| || ||| Sbjct 9752 ACGTTCTCAATGGTGTCGCTGGCCTCAACCTCAAGAGCAATGGTTTTGCCAGTGAGGGTT 9811 Query 138598 TTTACAAAAATCTGCATGG 138616 || || || |||||||||| Sbjct 9812 TTCACGAAGATCTGCATGG 9830 >seq763 Length=1889 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478 ||||| ||| | ||||| || ||| || |||||| |||| | || | | ||| Sbjct 1030 GTCGAAGGCATATTTTTCTCTGGCTCGTTCTGCGCCATTTTTTGGTTAAAGAAGCGTGGC 971 Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538 | |||||||| || || |||||||||||| |||| || || || || || |||||||| Sbjct 970 TTGATGCCCGGGCTCACCTTCAGCAACGAGCTGATTTCACGTGATGAGGGTCTGCACACT 911 Query 52539 GACTTTGCGTGCCTCTACTACAAGA 52563 |||||||| ||||| | ||| ||| Sbjct 910 GACTTTGCTTGCCTATTATACGAGA 886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496249832154720