Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1149 93.3 4e-14 >seq1149 Length=36903 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| || | | ||||||| || || | ||| || || Sbjct 9632 GTCGACTCCTTCTGAATGTTGTAGTCCGCAAGCGTGCGACCCTCCTCCAACTGCTTCCCG 9691 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | ||||| ||||||||||| ||||| || |||||||||||| || || ||| Sbjct 9692 GCAAAAATCAACCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGAATCTTGGCCTTT 9751 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | | | |||||||| || || ||| Sbjct 9752 ACGTTCTCAATGGTGTCGCTGGCCTCAACCTCAAGAGCAATGGTTTTGCCAGTGAGGGTT 9811 Query 127097 TTTACAAAAATCTGCATGG 127115 || || || |||||||||| Sbjct 9812 TTCACGAAGATCTGCATGG 9830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475488757942240