Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1878 84.2 2e-11 >seq1878 Length=84023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124181 CGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTT 124240 |||| |||||||||||||||| | ||| |||||| |||||| | || | || || | Sbjct 20959 CGGTATGCGTAACTCGCTGTTAATTGCGCCCATGCCAACGGCATCTACGTCGCAGATCCT 20900 Query 124241 AGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGC 124300 || ||||| || | | |||| || || ||| |||| | |||||||| || || ||| Sbjct 20899 TGGTAACAATGAGTGCATCGAACCCTTTACTTCCAATATCTACGTGCGCCGGGTCTTAAG 20840 Query 124301 CGGCGATTTTCAAGTGATAAA 124321 ||| || |||| ||| |||| Sbjct 20839 CGGGGAGTTTCCAGTTGTAAA 20819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451991753018960