Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1878 156 5e-33 seq763 109 7e-19 seq1392 87.8 2e-12 >seq1878 Length=84023 Score = 156 bits (172), Expect = 5e-33 Identities = 370/553 (67%), Gaps = 12/553 (2%) Strand=Plus/Plus Query 116055 CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 |||| | ||||||| ||||||||| || | |||| || || || ||| | ||| || Sbjct 21049 CTCCTCATCCCACAGATCAAACTGCAGTTTCCCTTCCGAAGCAGGGCTTCCTTTAAACGT 21108 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 116174 ||||| || || || || |||||||| | || || || | ||||| || || Sbjct 21109 TTCATAGGGCCCGTCCTTTTCAGCCAATTCCGTACTTGCTTCCACAGCTGCAAAGTAAAT 21168 Query 116175 TGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA 116234 ||||| || || | ||||| ||| |||||| | | || | || || | Sbjct 21169 GGTCTCGAAGATTTGTCTATTCAACTTCTTTGCCTCGGGGTGTGCGAATGGCAG--GGAA 21226 Query 116235 CAAAAT--AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 | | ||| ||||||| || || |||||||||| || | |||||||| |||| | Sbjct 21227 AGCAGTGCAAACGCATCCGCCAGTCCCTGGACACCGATACCCACAGGGCGATGCCTCAAA 21286 Query 116293 TTAGACTTTCGAGCGGTCTC-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 ||| | ||| || || | ||| ||||| || | ||| || |||| || ||||| Sbjct 21287 TTACTGTATCGGGCC-TCACACACTGGATAGTGGTTGCGATCAATCACCCGGTTAAGATT 21345 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 116411 | |||| ||||||||||| | || | | |||| ||||| |||| | || Sbjct 21346 TCTGGTCACAACCTTTGTCACCTCCTTCAATGCAACGTAGTCAAA--TGCGC----CATC 21399 Query 116412 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471 || ||| | |||||||| || || || || || || || | ||| ||| | Sbjct 21400 CTTCACAAAACGCGGAAGGGCAATAGAGGCTAGGTTGCATACGGCCACCTCGTCCCTCGA 21459 Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 ||||||||| | ||||||||| ||||||||||| | ||||| ||||| | || || || Sbjct 21460 AGTGTACTCGACAATTTCCGTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTTCTG 21519 Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 ||| ||||| ||||| ||||||||||| |||||| | || |||||| ||| || Sbjct 21520 ATTAGACTTGAAATTACATGCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTCCACCTG 21579 Query 116592 GGACTTGAGAATA 116604 |||| || ||| Sbjct 21580 AGACTCAAGGATA 21592 >seq763 Length=1889 Score = 109 bits (120), Expect = 7e-19 Identities = 338/512 (66%), Gaps = 12/512 (2%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || ||| ||||||||| ||||| || ||||| | || || | ||||| Sbjct 612 TACTCACCAACCTTCTTCTCGAAAAAGTTAGTTTTCCCCTGAAGAGAAATCATATCCATG 671 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATT-GTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || |||||||||||||| ||||| || | | | ||||||| ||||| || Sbjct 672 AAGTCAAATGGGTTCTTCGAGTTGTAATGACGGTCGTACCCCAAGGACACC-AGGAGCCG 730 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-AC 127409 ||| | ||| |||||||||||| || |||| || ||| ||||| || || | | || Sbjct 731 ATCGGCGACAAACTCAATGTACTGAGTCATCAGCTGAGAATTCATTCCAATTAAGCGGAC 790 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || | || || | |||||| | |||||| || || | | || || | Sbjct 791 A-GGTAATGCATCGCAAATGAACTCTCGCTCAATTGATACTGCATTGCATATAATTTCAA 849 Query 127470 GAATAGTGTCCACCC-CAGGTCTATTGCG-TAAAGT-CTTGAAGAGTTCCACAGCAAACT 127526 | | | ||| | ||| | || || || | | || | | | | |||||| | Sbjct 850 GCACACGATCCCTCGGCAGCTTGTTTACGATATACTTCTCGTATAATAGGCAAGCAAAGT 909 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||| |||||||| ||||| || || || || || |||| || || ||||| | Sbjct 910 CAGTGTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGCCCGGGCATCA 969 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 || |||||||| ||||| ||||| || || || ||||||||||| || || || || | Sbjct 970 AGCCACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAATATGCCTTCGA 1029 Query 127647 CACACGCGAACGCAAATAGACGC-TCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 127705 || ||| ||||| | || ||| | || || | || ||| | ||| ||| | Sbjct 1030 CAGCCGCAAACGCGACGAGCCGCGTAGGGAACGAAGTCTGAC----TGCCAATCCATTCA 1085 Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGG 127737 |||||||| | ||||||||||| ||||| || Sbjct 1086 ATCGCCCATTTGGCCTTTTTCTCAATACACGG 1117 >seq1392 Length=6698 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 176621 TGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATA 176680 || |||||||||| ||||||||||||||||||||| ||||||| |||| ||| | |||| Sbjct 434 TGAATCATATTGATGATGAGACCCTTAATGTGTGACCCATCGTGATCCTGATCAGACATA 493 Query 176681 ATCATGAGCCGACCATAGCGAAG 176703 ||||| || | ||||| || || Sbjct 494 ATCATCAGGTGCCCATACCGCAG 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613491662930160