Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq763 143 3e-29 seq1149 107 2e-18 >seq763 Length=1889 Score = 143 bits (158), Expect = 3e-29 Identities = 407/618 (66%), Gaps = 7/618 (1%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 |||||||||||| |||| ||||| || | ||||| || ||||||||||| || | Sbjct 899 GCAAGCAAAGTCAGTGTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAG 958 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 |||||||| | ||| || || || | |||||| |||||| ||| ||| || || || Sbjct 959 CCCGGGCATCAAGCCACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAA 1018 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 | ||| ||||| ||||| || || || || ||| ||||| | || | ||| | Sbjct 1019 TATGCCTTCGACAGCCGCAAACGCGACGAGCCGCGTAGGGAACGAAG--TC-TGACTGCC 1075 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 ||||| | |||||||| |||||||| | | ||||| ||||| ||||| | Sbjct 1076 AATCCATTCAATCGCCCATTTGGCCTTTTTCTCAATACACGGAATCGTCCTTATGGCATG 1135 Query 133134 CAACAAACGGAGTTTCTCTTC-CGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACA 133192 | || || | || || || || || || || || ||||| | || || Sbjct 1136 TAGCAGTCGTTGCTTTTCGTCGGGATCCAC-AACATACGTATCGATCAACACGGAGTATG 1194 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 | || || || | || ||||| || || || || || || || || || | || | Sbjct 1195 TCTCAGAATGGATATTTTCCATAGCAATCTGGAACCCATAGAAACATCGAACTTCAGGTA 1254 Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 |||||||||| ||| || || | || || || || ||||| ||||| || | Sbjct 1255 CCTGCACTTCGCACATGAACCGTTCCGCAAGGTTCTCCAGCACAATGCCATCGCTTGCCG 1314 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGT 133372 |||| || |||| ||| || |||||||| || |||||| ||||| || |||||| | Sbjct 1315 CGAAGAAAGCCAACACATGTTTGATGAAGTGTCGCTCGCCGTCGTCCAGCTTCTCCCAAT 1374 Query 133373 CGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGC-CTCGGCTTTT 133431 | | |||| || ||||| | ||||| || |||| | | | || ||| || | Sbjct 1375 CTGTCATGTCATTCCCAAGGTCGATTTCCTCCACCGTCC-AGATGCTGCTCTCCGCCTCC 1433 Query 133432 TTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTT 133491 |||||| | ||| ||||| | || | || || || || || | ||| ||||||| Sbjct 1434 TTGTACTTCTGCCATATGTCAGGGTACTTGATAGGGAAGATAACGTAGCGGTCGGGGTTT 1493 Query 133492 TCGCGCAACAGCGGCTCC 133509 || || || |||||| Sbjct 1494 TCTGTCAGAAGTGGCTCC 1511 >seq1149 Length=36903 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| ||||||||||| | | || || ||||||| | Sbjct 9828 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAAACCATTGCTCTTGAGGTTGAGGCCAGC 9769 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| || || | || || Sbjct 9768 GACACCATTGAGAACG-TAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCGGATCA 9710 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| || || || ||| |||| || | ||||| || |||||||| Sbjct 9709 GCAGCGGTTGATTTTTGCCGGGAAGCAGTTGGAGGAGGGTCGCACGCTTGCGGACTACAA 9650 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || ||||| |||| ||||| |||| || || Sbjct 9649 CATTCAGAAGGAGTCGACACTGCACCTGGTACTCCG 9614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160133123840