Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1691 95.1 5e-14 seq1625 91.5 6e-13 >seq1691 Length=35836 Score = 95.1 bits (104), Expect = 5e-14 Identities = 185/275 (67%), Gaps = 9/275 (3%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || || || |||||||| ||||||||||| | || || ||||| || || Sbjct 27439 ACGGTACCTGCGTACTTCAATGACGCACAACGGCAGTCGACAAAGGATGCTGGGACCATC 27498 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 || ||||| || || | || || || ||||| || || ||||| || | |||||||| Sbjct 27499 GCCGGTTTGAACGTAGTGCGCATCATCAATGAGCCCACCGCAGCCGCCATCGCATATGGG 27558 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 || ||| || | | || || ||||| | || || ||| ||||||| || Sbjct 27559 CT---------AAACAAAGCCGGTGAGAAGAATATCCTGGTGTTCGATCTTGGTGGTGGT 27609 Query 451511 ACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 || |||| || | || |||| || || || | || ||||| ||| || || Sbjct 27610 ACCTTTGATGTGTCACTGCTGACAATCGATGAGGGCTTCTTCGAAGTTGTGGCGACAAAC 27669 Query 451571 GGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 |||||||| || || || ||||| || ||||||| Sbjct 27670 GGTGATACGCACCTTGGTGGTGAGGACTTTGATAA 27704 >seq1625 Length=91820 Score = 91.5 bits (100), Expect = 6e-13 Identities = 151/215 (70%), Gaps = 11/215 (5%) Strand=Plus/Plus Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 |||||| | ||||| | || || | |||||||| || || ||||| || |||||||| Sbjct 8930 TGCTGGACTGAATGTGATCCGTGTTGTGAATGAACCGACTGCTGCTGCACTGGCATATGG 8989 Query 451450 ACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTA-GTATTTGATTTTGGTGGAG 451508 || ||| || ||| |||| | | || || || | |||| ||||||| | Sbjct 8990 -CTTGGACAA--------AAC-GAAGGACAGCTTAATTGCCGTGTATGATCTTGGTGGTG 9039 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 |||| ||||| || |||||| ||||| | || || ||||| ||||||||||| | Sbjct 9040 GAACATTTGATATCTCCGTACTTGAAATTGCCGGAGGTGTTTTTGAGGTAAAGGCAACGA 9099 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 |||| || ||||| || || || ||||| ||||| Sbjct 9100 ATGGCGACACTCACCTTGGTGGAGAAGACTTTGAT 9134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975667114054808