Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1459 183 2e-40 >seq1459 Length=76451 Score = 183 bits (202), Expect = 2e-40 Identities = 412/613 (67%), Gaps = 7/613 (1%) Strand=Plus/Plus Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA---TTCATTTCTTTGTCT 518161 || |||||| || ||||| || | |||||| || || || |||||| || || Sbjct 49505 GTCACATCAAAAGTGCCACCTCCAAGATCAAAGATGAGCACCGTCTTCATTGCTCCTTCA 49564 Query 518162 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 || | || | |||||||||| || || || |||||||| |||| || | ||| Sbjct 49565 GAACTTCTGTCCATGCCATACGCAATGGCTGCGGCTGTTGGTTCGTTAACGATGCGCAAC 49624 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 || | ||||||||||||| ||| || ||||| || ||||| | ||| || ||||| ||| Sbjct 49625 ACCTCAAGACCAGCAATTGATCCCGCGTCTTTTGTTGCTTGACGTTGCGAGTCGTTGAAA 49684 Query 518282 TATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTT 518341 || ||||| ||||| | ||||| | | ||| | | |||| || | || || Sbjct 49685 TACGCAGGCACAGTCACGACGGCCTTTGATACCTTCTCGCCAAGGTAGGATTCCGCGATT 49744 Query 518342 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCT-TGGATTC 518400 | |||||||| || | ||| | || | ||| |||||| | | | | || Sbjct 49745 TCCTTCATTTTCTGCAAGACCATCGCACTTATCTCTTC-GGGGAAAAAGGTTCTCCTCTC 49803 Query 518401 ATTTTGATATGATACTTCAAAATATGGTTT-ATTACCAACATTAATAACTTTAAATGGCC 518459 | ||| || ||| || | | ||||| | || || | | || ||||| |||| Sbjct 49804 ACCTTGGTACTCTACCTCCACAACCGGTTTCCCTTCCTTCA-CAGTTACCTTAAAGGGCC 49862 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 | | |||||| || | ||| | | |||||| | | | || ||||||| ||| || | Sbjct 49863 AATGTTTCATGTCAGCTTGCAGGTCTGGGTCATCATATTTTCGGCCAATTATTCGCTTGG 49922 Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 ||||||| | ||||| ||||| || || || |||||| || || ||||| |||| || Sbjct 49923 CATCAAACACCGTATTTGTTGGGTTCATGGCCACTTGATTCTTTGCGGCATCGCCAACCA 49982 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 | | || || || | || || ||||| || || |||||||| ||||| ||||| || | Sbjct 49983 GTCGCTCAGTTTCACTGAAGGACACATAAGAAGGTGTTGTGCGGTTACCCTGATCGTTGG 50042 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699 | | ||||||||| | | |||||| | ||||| || || ||||||| || | || Sbjct 50043 CGACAATTTCAACCTGATCATTTTTGAACACACCCACGCACGAGTAAGTTGTGCCAAGAT 50102 Query 518700 CAATACCAATAGC 518712 |||| || || || Sbjct 50103 CAATGCCGATCGC 50115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780721863206356