Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq809 345 5e-90 seq1459 239 6e-58 seq1691 125 9e-24 seq1660 104 3e-17 seq1878 82.4 1e-10 >seq809 Length=19217 Score = 345 bits (382), Expect = 5e-90 Identities = 999/1527 (65%), Gaps = 23/1527 (2%) Strand=Plus/Minus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||| || || || || ||||| | | || || | | |||| || || ||| Sbjct 1795 CCCTTGTCGTTTGTGATGACAATCTGGTTGCGCTTGCCAGTGCCCTTCTCCTCCGCAGAA 1736 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || | | ||||||||| || || | ||||| | || | || ||||| || | Sbjct 1735 ACGCTAAGAATACCATTAGCGTCTAGGTCGAAGGTCACTTCTATCTGTGGCACGCCGCGG 1676 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 ||||| | || || || | | ||| || || || | | | | ||| ||| | | Sbjct 1675 GGTGCCGGGGGGATTCCAGAGAGATCGAAGGTGCCCAAGAGATGGCAGTCCTTCGTCATG 1616 Query 6815 TTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAG 6874 |||| ||||| ||| |||| | ||| ||| | || ||||| ||| || ||| Sbjct 1615 GTACGCTCACCCTCAAAGACCTGAATGTGCACACCGGGCTGATTGTCTGAGTATGTGGAG 1556 Query 6875 AAGATTTGT-TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAAT 6933 |||||||| ||||| || | || |||||||| || | | || | | ||||| | Sbjct 1555 AAGATTTGGCTCTTT-TTGGTGGGGATCGTCGTGTTGCGCTTGATCAGTGCCGTCATCAC 1497 Query 6934 ACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTG 6993 ||||| || |||| || || | || || | || |||| || | || ||| Sbjct 1496 GCCACCTGCCGTCTCGATGCCGAGCGTAAGCGGGGCGACATCCAGAAGGAGGAGACCTT- 1438 Query 6994 AACAGATTCGTTCC-CTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGC 7050 | | || || | ||| |||| || |||||| ||||| || | || ||||| || Sbjct 1437 --CCGTTTGCTTGCTCTTACCACCGGTCAAGATGAAAGCTTGTACAGCAGCGCCGTAGGC 1380 Query 7051 GACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAA 7110 || ||||| |||||||| || | || || || || || || ||| | || || | Sbjct 1379 CACTGCCTCGTCGGGGTTGATGCTCTTGTTAAGCTCCTTGCCACCGAAAAAGTCAGACAC 1320 Query 7111 CATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTT 7170 | || | || ||||| || || || ||||| |||| || | || | ||| Sbjct 1319 AAGCTGCATCACCTTGGGGATACGGGTGGAACCACCAACCAGGACCACATCGTGCACGGC 1260 Query 7171 CGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC---G 7227 ||| || ||||| | || | || || || |||| || || ||| | Sbjct 1259 GCGTTTGTCCATCTTGGCATCCTGCAGCACACGCTCTACGGGTTGCA---ATGTACCACG 1203 Query 7228 GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAAC 7287 ||||| ||| ||||||||||| ||||| ||||||||||||| | | ||| |||| Sbjct 1202 GAACAGGTCACCGCACAGTTCCTCGAAACGAGCACGGGTAATGGTCGCCTGGAAGTCAAT 1143 Query 7288 GCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTT 7347 | ||| | | | ||| || || ||||||| || || | ||||| | || ||||| Sbjct 1142 GTTTTCGAAGAGTGCATCGATCTCGATGGTTGCCTGCGCAGCGGAAGAAAGTGTGCGCTT 1083 Query 7348 TGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTT 7407 ||||||||||| ||||| || | || |||||||| ||| ||| || | ||| || Sbjct 1082 GGCGCGCTCACAAGCCGTACGAAGGCGGCGAAGGGCGCGCAAGTTCGATGAGAGATCCTT 1023 Query 7408 ---CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATC 7464 ||| | || || || || || || | ||||| | || | ||||| || Sbjct 1022 GCCCTTGTTCTTGCGCTTGAATTCCTCGGTAAAGTGAGCCACAAGGCGATTGTCGAAGTC 963 Query 7465 TTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAAT 7524 ||| ||||| | ||| || || || || ||||| || || ||||| || || ||||| Sbjct 962 TTCTCCACCAAGGTGGGTGTCACCATTTGTGGCTTTCACCTCGAAGATGCCGCCGTCAAT 903 Query 7525 GTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTAT 7583 | | ||| | ||||| || || |||||||| || || || ||||| ||||| ||| Sbjct 902 CGTCAGCAATGTCACATCGAAGGTGCCACCACCAAGATCGAAGATGAGCACGTTGCGTTC 843 Query 7584 CGT--CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 | | | || | ||| || || || || || || || || |||||||| || || || Sbjct 842 CTTCCCCTCATCAGCCTTGTCCAGGCCATAGGCAATTGCAGCAGCCGTTGGCTCGTTGAT 783 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 || || || | ||| |||||||| || |||| || ||||| || || || ||||| Sbjct 782 GATGCGCAGCACCTCCAGACCAGCAATCGTCCCCGCGTCCTTCGTTGCCTGGCGCTGCGA 723 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||||| ||||| || || || |||||||| || | | || | ||| || |||||||| Sbjct 722 GTCGTTGAAGTATGCAGGCACTGTTACGACAGCCTTAGCCACCTGCTTCCCAAGATACGA 663 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG 7821 ||||| | || ||||| || || ||||| || ||||| |||| || Sbjct 662 CTCCGCAACCTCCTTCATCTTCAATAGTACCATGGAACTGATCTCCTCAGGATTGAAGGT 603 Query 7822 TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881 |||||| |||||| || | || | |||| || || || | | || || || Sbjct 602 TTTCGTCTCACCGCGGAACTGTACCTGGATCACTGGCTTGTCGTCGCCCTTGGTGACGAC 543 Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGAT 7941 ||| | | ||| | ||||| ||| || || ||| || ||||| | |||||| Sbjct 542 CTTGAAGGGCCAGTGCTTCATGTCGGACTGCACGACAGAGTCGGAGAACTTCCGTCCGAT 483 Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 || || || || || || || ||||| | |||||||| || |||||||||||||| Sbjct 482 CAGTCGTTTCGCGTCGAACACCGTGTTCGTAGGGTTCATCGCCACCTGGTTCTTCGCCGC 423 Query 8002 GTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATT 8061 || ||||| || || || | ||||| || || ||||| || || ||||| || || Sbjct 422 ATCGCCGATCAGGCGCTC---AGAGTCCGTGAAGGCAACGTAGGACGGCGTCGTACGGTT 366 Query 8062 CCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATA 8121 || ||||| || ||||| ||||| || || ||||| ||||| || || |||||||| || Sbjct 365 ACCCTGGTCATTTGCAATGATTTCCACACGTTCGTTCTGCCACACACCAACGCACGAGTA 306 Query 8122 CGTTGTTCCTAAATCAATACCGATTGC 8148 ||| || || | || ||||| || || Sbjct 305 CGTCGTACCGAGGTCGATACCAATGGC 279 >seq1459 Length=76451 Score = 239 bits (264), Expect = 6e-58 Identities = 482/700 (69%), Gaps = 19/700 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||| | ||||| || || || || || | |||||||| | || Sbjct 49427 TCAAAGTCTTCCCCACCAAGATGTGTGTCACCAGCAGTTGCCCTCACTTCAAATAAGCCA 49486 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || |||||||||| ||||| |||||||| || ||||| || || ||||| ||||| || Sbjct 49487 CCGTCAATGTTTAGCAACGTCACATCAAAAGTGCCACCTCCAAGATCAAAGATGAGCACC 49546 Query 7577 TTCGT-ATCGTCGTCTTT-GTTCTTAT--CGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 || | || | | ||| | ||| | | | || ||||| || || || || ||||| Sbjct 49547 GTCTTCATTG-CTCCTTCAGAACTTCTGTCCATGCCATACGCAATGGCTGCGGCTGTTGG 49605 Query 7633 TTCATTAATAATACGAAGACAGTTCAGG-CCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 ||| |||| || || | ||| ||| | |||||||| | | |||| ||||| || |||| Sbjct 49606 TTCGTTAACGATGCGCA-ACACCTCAAGACCAGCAATTGATCCCGCGTCTTTTGTTGCTT 49664 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | |||||||| ||||| || || || || || || ||||| || | | || |||| | Sbjct 49665 GACGTTGCGAGTCGTTGAAATACGCAGGCACAGTCACGACGGCCTTTGATACCTTCTCGC 49724 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTT-GGTAAGAACCATCGATGAAATCTCTTCA 7810 | || || ||||||||||| || |||||||| | ||| ||||||| |||||||| Sbjct 49725 CAAGGTAGGATTCCGCGATTTCCTTCATTTTCTGCAAG-ACCATCGCACTTATCTCTTC- 49782 Query 7811 GCCGCAAACTGTT-TCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATC-CGCAG 7868 | | ||| ||| || | ||||| | | || || || | | ||||| | | Sbjct 49783 GGGGAAAAAGGTTCTCCTCTCACCTTGGTACTCTACCTCCACAACCGGTTTCCCTTCCTT 49842 Query 7869 CACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAA 7928 ||| | | |||||| | | ||||| |||||| || |||| | | | |||| | Sbjct 49843 CACAG----TTACCTTAAAGGGCCAATGTTTCATGTCAGCTTGCAGGTCTGGGTCATCAT 49898 Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 | |||| || || | ||||| |||||||| || || ||| | ||||||||||| || Sbjct 49899 ATTTTCGGCCAATTATTCGCTTGGCATCAAACACCGTATTTGTTGGGTTCATGGCCACTT 49958 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 | ||||| || || || || | || || || | |||| | || | || || || | Sbjct 49959 GATTCTTTGCGGCATCGCCAACCAGTCGCTC---AGTTTCACTGAAGGACACATAAGAAG 50015 Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | || || || || || || ||||| || | |||||| || | || |||| | || | Sbjct 50016 GTGTTGTGCGGTTACCCTGATCGTTGGCGACAATTTCAACCTGATCATTTTTGAACACAC 50075 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | |||||||| || ||||| || | |||||| ||||| || Sbjct 50076 CCACGCACGAGTAAGTTGTGCCAAGATCAATGCCGATCGC 50115 >seq1691 Length=35836 Score = 125 bits (138), Expect = 9e-24 Identities = 252/374 (67%), Gaps = 6/374 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || || |||||||| | ||| ||||| || ||||| ||||| |||| || Sbjct 27702 ATCAAAGTCCTCACCACCAAGGTGCGTATCACCGTTTGTCGCCACAACTTCGAAGAAGCC 27643 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || || | | || || |||||||| ||||||||||| || || || | || | Sbjct 27642 CTCATCGATTGTCAGCAGTGACACATCAAAGGTACCACCACCAAGATCGAACACCAGGAT 27583 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | || || ||||||| || || || ||||| || || || || || || Sbjct 27582 ATTCTTCTCACCGGCTTTGTT------TAGCCCATATGCGATGGCGGCTGCGGTGGGCTC 27529 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 ||| || || || | ||||| || || || || | ||||| || |||| || || Sbjct 27528 ATTGATGATGCGCACTACGTTCAAACCGGCGATGGTCCCAGCATCCTTTGTCGACTGCCG 27469 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| | || || ||||| || || |||||||| || |||| | ||||||| || || Sbjct 27468 TTGTGCGTCATTGAAGTACGCAGGTACCGTTACAACAGCGTTTTTCACTTTCTCGCCAAG 27409 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 |||| ||| || || || ||||| || || ||||| | |||||||| | | Sbjct 27408 GTACGTTTCTGCAATTTCCTTCATCTTCTGCAGCACCATGGCACTGATCTCTTCTGGTGT 27349 Query 7816 AAACTGTTTCGTTT 7829 ||||||||| ||| Sbjct 27348 GAACTGTTTCTTTT 27335 >seq1660 Length=18801 Score = 104 bits (114), Expect = 3e-17 Identities = 120/161 (75%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||||||||| || || | |||| |||||||| | || || ||||| || Sbjct 7852 TGGTTCTTCGCCGCATCGCCAACAAGAACCTCATTATTGAC---GAAAGCAACGTAGGAC 7908 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || ||||| || || || ||||| || ||||| ||||| || || ||||| ||||| || Sbjct 7909 GGCGTCGTACGGTTACCCTGGTCATTTGCAATGATTTCCACACGTTCGTTCTGCCACACA 7968 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || |||||||| ||||| || || | || ||||| || || Sbjct 7969 CCAACGCACGAGTACGTCGTACCGAGGTCGATACCAATGGC 8009 >seq1878 Length=84023 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 105238 GCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAACTCCAGAATTTCT 105297 || || || || || || |||||||| || ||| | || |||| | |||||| Sbjct 21419 GCAATAGAGGCTAGGTTGCATACGGCCACCTCGTCCCTCGAAGTGTACTCGACAATTTCC 21478 Query 105298 GTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACTTTTCATTACAC 105357 || ||||||||||| |||||||||| || | | ||| || || ||||| |||||| Sbjct 21479 GTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTTCTGATTAGACTTGAAATTACAT 21538 Query 105358 GCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTC 105392 || || |||||||||||| | || |||||||| Sbjct 21539 GCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTC 21573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635116715261840