Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1878 95.1 2e-14 >seq1878 Length=84023 Score = 95.1 bits (104), Expect = 2e-14 Identities = 288/440 (65%), Gaps = 9/440 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | |||||| |||| || || ||||||||||||| || || | || ||| Sbjct 22269 CCACAACAGATGTTCCTGCGTGTTGCCCTCGGTATCCATGGAGAGGACTTGGAACGTGTG 22210 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||||| ||| | ||||| | || | || | |||||| || ||||| | ||| Sbjct 22209 AAGGAGACATATGACTACATGTCGCAAGGGTTTTTTACCCACGCTACTCCAACGTTATTC 22150 Query 111732 AACGCTGGTACACCAAGACCCCAAAT--GTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 || || || || ||| || ||||| || || || || ||| | || | || | Sbjct 22149 AATGCGGGGACCCCATTCCCACAAATGAGTTCA--TGCTTTCTTGTAGCTATGCGTGAAG 22092 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || ||||||| |||| ||| |||| | ||||| ||| || | |||| Sbjct 22091 ACAGTATTGATGGCATCTACGACACACTCAAACAGTGTGCGATCATCAGCAAATCAGCTG 22032 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTC-GTATTAGAGGTACA 111908 |||| |||||||| ||||| || | | | | || | | | || || ||| Sbjct 22031 GTGGGATCGGGATCCACATGCACAACATTCGCG-CAGCGGGGAGCTACATCGCCGGGACA 21973 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 |||||| || ||||| | | || |||||||| || | || ||| || |||||| Sbjct 21972 AATGGTACGTCGAATGGTCTGGTCCCCATGCTTCGTGTGTGGAATAACACTGCTCGCTAT 21913 Query 111969 GTAAACCA---AGCTGGGCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || |||| | ||| |||||||| | | || | ||| | ||||| |||||| Sbjct 21912 GTTGACCAGGGCGGTGGCAAGCGCAAGGGCGCCTTTGCTATTTATTTGGAGCCCTGGCAC 21853 Query 112026 GCGGATATCATGGAGTTCCT 112045 ||||||||| | | ||||| Sbjct 21852 GCGGATATCTTTGGTTTCCT 21833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620726679698720