Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1914 87.8 2e-12 >seq1914 Length=93243 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 136704 CGCACCGTT---CTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCAC 136760 ||||||||| | ||||||||||| ||||||||||||| || |||| |||||||||| Sbjct 90928 CGCACCGTTGCTCCTATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCAC 90987 Query 136761 GGGTTCGAGCCCCGTTGGGAACAGCTTTT 136789 ||||||| ||| ||||||| || |||| Sbjct 90988 AGGTTCGACCCCTGTTGGGAGCACGTTTT 91016 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 || ||||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 91551 TCCTATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 91610 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 91611 CTGTTGGGAGCA-CTTTT 91627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588961084182800