Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq763 132 6e-26 seq1878 109 6e-19 seq1609 86.0 7e-12 >seq763 Length=1889 Score = 132 bits (146), Expect = 6e-26 Identities = 349/519 (67%), Gaps = 24/519 (5%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || ||||| |||||| || ||||| || ||||| | ||| ||| | ||||| Sbjct 611 ATACTCACCAACCTTCTTCTCGAAAAAGTTAGTTTTCCCCTGAAGAGAAATCATATCCAT 670 Query 117045 AAAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGA 117102 ||||||||||| ||||||| ||| || || ||| | ||||||| ||||| Sbjct 671 GAAGTCAAATGGGTTCTTCGAGTTGTAA-TGACGGTCGTACCCCAAGGACACC-AGGAGC 728 Query 117103 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGA-GATT 117161 ||||| | ||| |||||||||||| | |||| || ||| ||||| || || | | Sbjct 729 CGATCGGCGACAAACTCAATGTACTGAGTCATCAGCTGAGAATTCATTCCAATTAAGCGG 788 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 117221 ||| || | ||| || | |||||| || |||||| || || | | || | Sbjct 789 ACA-GGTAATGCATCGCAAATGAACTCTCGCTCAATTGATACTGCATTGCATATAATTTC 847 Query 117222 GTGGATA-GTT---TCGGTAGTGGGTCTATTACGCAAAG--TCTTG---AAGAGCTCCAC 117272 | | | | | |||| || || ||||| | ||| | || || || Sbjct 848 AAGCACACGATCCCTCGGCAGCTTGT---TTACGATATACTTCTCGTATAATAGG--CAA 902 Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 | |||| || ||| ||||||||||| || ||||| || || || |||| || || Sbjct 903 G-CAAAGTCAGTGTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGCCC 961 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| | || |||||||| |||||| |||| |||||||| || || ||||| || || Sbjct 962 GGGCATCAAGCCACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAATAT 1021 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAA 117452 || || ||| ||||||||| | || ||| | ||| || || || || ||| Sbjct 1022 GCCTTCGACAGCCGCAAACGCGACGAGCCGCGTAGGGAACGA---AGTCTGACTGCCAAT 1078 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 117491 ||||| || |||||||| ||||| ||||||||||| || Sbjct 1079 CCATTCAATCGCCCATTTGGCCTTTTTCTCAATACACGG 1117 >seq1878 Length=84023 Score = 109 bits (120), Expect = 6e-19 Identities = 352/540 (65%), Gaps = 16/540 (3%) Strand=Plus/Plus Query 106094 TCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAG 106153 ||||||| |||||| || || ||||| || | || || | ||| || |||||| Sbjct 21056 TCCCACAGATCAAACTGCAGTTTCCCTTCCGAAGCAGGGCTTCCTTTAAACGTTTCATAG 21115 Query 106154 GAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCA 106213 | || | |||||||||||| || || |||| | ||| || ||||| || Sbjct 21116 GGCCCGTCCTTTTCAGCCAATTCCGTACTTGCTTCCACAGCTGCAAAGTAAATGGTCTCG 21175 Query 106214 AAGATACGAGCATTCATCTCCTTGGCTTCA---TCTGAATCAAATGCGTAGCGGCA-CAA 106269 ||||| | ||||| || ||| || || | || | |||| | || | | || Sbjct 21176 AAGATTTGTCTATTCAACTTCTTTGCCTCGGGGTGTG---CGAATG-GCAGGGAAAGCAG 21231 Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329 ||| ||||||| || || || ||||| | ||| | ||| | || | || |||| Sbjct 21232 TGCAAACGCATCCGCCAGTCCCTGGACACCGATACCCACAGGGCGATGCCTCAAATTACT 21291 Query 106330 CTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGG 106388 | ||| || || || || ||||| || | ||||| || ||||| |||||| ||| Sbjct 21292 GTATCGGGCC-TCACACACTGGATAGTGGTTGCGATCAATCACCCGGTTAAGATTTCTGG 21350 Query 106389 TAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGA 106448 | |||| |||||| | || | | | | || ||||| | || | || || | Sbjct 21351 TCACAACCTTTGTCACCTCCTTCAATGCAACGTAGTCAAATGCGCCA------TCCTTCA 21404 Query 106449 CATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGT 106508 || | |||||||| || || || | ||||| || ||| ||| ||| | |||| Sbjct 21405 CAAAACGCGGAAGGGCAATAGAGGCTAGGTTGCATACGGCCACCTCGTCCCTCGAAGTGT 21464 Query 106509 ACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTAC 106568 |||| | |||||| || ||||| || || | |||||||| || | ||| || || ||| Sbjct 21465 ACTCGACAATTTCCGTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTTCTGATTAG 21524 Query 106569 TCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACT 106628 ||| || || ||||||||||| ||||| | || |||||| ||| ||| |||| Sbjct 21525 ACTTGAAATTACATGCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTCCACCTGAGACT 21584 >seq1609 Length=16429 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 8178 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 8119 Query 136226 GGTAGGA 136232 ||||||| Sbjct 8118 GGTAGGA 8112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589965858736240