Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq676 95.1 1e-14 >seq676 Length=123097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 153207 ATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAG 153266 || || ||||| ||||| | || || ||| |||| | | || ||||| |||| Sbjct 113024 ATCGGACAAGGTTACTACGAGTGTATAACTCCCTCAGTACTTCTTCGCAACGTCATTGAA 113083 Query 153267 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 153326 |||||| | ||||| || | ||||| || ||||| || ||||||||||| || | ||| Sbjct 113084 AATCCTGGGTGGTATACGCCGTACACGCCGTATCAGGCCGAGATATCTCAAGGTCGTTTG 113143 Query 153327 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAAC 153386 ||| | || || || | ||||||| | || ||||| || ||| | | |||||| Sbjct 113144 GAATCGTTGTTAAACTTCCAAACGATGATAACAGATCTGACAAAGATGGATGTCGCAAAC 113203 Query 153387 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATT 153433 ||||| || || ||| | ||||| || || || |||||| |||| Sbjct 113204 GCATCCCTCTTGGATCAGGCAACCGCTTGTGCTGAGGCAATG-TATT 113249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579198131435840