Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq676 96.9 4e-15 >seq676 Length=123097 Score = 96.9 bits (106), Expect = 4e-15 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||| ||||| | || || ||| |||| | | || ||||| |||| Sbjct 113024 ATCGGACAAGGTTACTACGAGTGTATAACTCCCTCAGTACTTCTTCGCAACGTCATTGAA 113083 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 |||||| | ||||| || | ||||| || ||||| || ||||||||||| || | ||| Sbjct 113084 AATCCTGGGTGGTATACGCCGTACACGCCGTATCAGGCCGAGATATCTCAAGGTCGTTTG 113143 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA--TAGCAA 158059 ||| | || || || | ||||||| | || ||||| || ||| | | || | |||| Sbjct 113144 GAATCGTTGTTAAACTTCCAAACGATGATAACAGATCTGACA--AAGATGGATGTCGCAA 113201 Query 158060 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 ||||||| || || ||| | ||||| || || || |||||| Sbjct 113202 ACGCATCCCTCTTGGATCAGGCAACCGCTTGTGCTGAGGCAATG 113245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588036307603360