Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq138 87.8 1e-11 >seq138 Length=26409 Score = 87.8 bits (96), Expect = 1e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725 || |||||||| || ||||||||||| || ||||| |||| || | ||||| || || Sbjct 13950 GACTTTTCTTCGCCGAATATTGCCAAGGAGATGCACGTTGGCCACCTCCGTTCCACAATA 13891 Query 930726 ATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCAAT 930785 || || || | | ||| | | | ||||| ||| | | | |||||||| |||| Sbjct 13890 ATCGGTGAGGCCATTTGTCGCCTGTTTGAATTTTGCCAATATGAGGTTCATCGCATCAAC 13831 Query 930786 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTAT 930830 |||||||||||||||||||| || || ||||| || ||||| Sbjct 13830 CATATTGGTGATTGGGGAACTGCGTTCGGGATGTTGAT--CTTAT 13788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029188855982740