Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1149 87.8 1e-12 >seq1149 Length=36903 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || || | || | | || ||||| ||| Sbjct 9626 TGCAGTGTCGACTCCTTCTGAATGTTGTAGTCCGCAAGCGTGCGACCCTCCTCCAACTGC 9685 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| ||||| ||||| || || || || || || || ||||| || Sbjct 9686 TTCCCGGCAAAAATCAACCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGAATCTTG 9745 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||||| | || | ||||| | || || ||||||| | |||||||| || Sbjct 9746 GCCTTTACGTTCTCAATGGTGTCGCTGGCCTCAACCTCAAGAGCAATGGTTTTGCCAGTG 9805 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | ||||| || || ||||||||||| Sbjct 9806 AGGGTTTTCACGAAGATCTGCATGGT 9831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396268615143282