Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1149 89.7 4e-13 >seq1149 Length=36903 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||| || | || | ||| | || ||||||||||| |||||||| Sbjct 9637 CTCCTTCTGAATGTTGTAGTCCGCAAGCGTGCGACCCTCCTCCAACTGCTTCCCGGCAAA 9696 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||||| ||||||| || | ||||||||||| |||||| ||||| | Sbjct 9697 AATCAACCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGAATCTTGGCCTTTAC-GT 9755 Query 48695 ACCCA---CAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTT 48751 | || | | ||| ||||| ||||| | | ||| ||||| || || | ||||| Sbjct 9756 TCTCAATGGTGTCGCTG--GCCTCAACCTCAAGAGCAATGGTTTTGCCAGTGAGGGTTTT 9813 Query 48752 TACAAAAATCTGCATCGTG 48770 || || |||||||| ||| Sbjct 9814 CACGAAGATCTGCATGGTG 9832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928193936398