Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq763 132 9e-26 >seq763 Length=1889 Score = 132 bits (146), Expect = 9e-26 Identities = 349/524 (67%), Gaps = 9/524 (2%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| |||||||| |||||| || || || || || ||| ||||| |||| ||| Sbjct 899 GCAAGCAAAGTCAGTGTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAG 958 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 || ||||| | || | || || | ||| ||||| || ||| ||||||||||| || Sbjct 959 CCCGGGCATCAAGCCACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAA 1018 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG- 48308 ||||| || || ||||| |||||| ||||| | ||| |||| || || ||| Sbjct 1019 TATGCCTTCGACAGCCGCAAACGCGACGAGCCGCGTAGGGAACGAAG---TC-TGACTGC 1074 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 ||||| || |||||| | ||||| |||| || || || |||||| |||||| Sbjct 1075 CAATCCATTCAATCGCCCATTTGGCCTTTTTCTCAATACACGGAATCGTCCTTATGGCAT 1134 Query 48369 GGAAGAGCTTCTTGC-ACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 | | || | |||| || | | ||| ||||||| ||| || || | | ||| Sbjct 1135 GTAGCAG-TCGTTGCTTTTCGTCGGGATCCACAACATACGTATCGATCAACACGGAGTAT 1193 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 ||||||| || | ||| || ||||| ||||||||||| ||||| | | ||| Sbjct 1194 GTCTCAGAATGGATATTTTCCATAGCAATCTGGAACCCATAGAAACATCGAACTTCAGGT 1253 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 ||||||||||| ||| | ||| || ||||| || || ||||| || Sbjct 1254 ACCTGCACTTCGCACATGAACCGTTCCGCAAGGTTCTCCAGCACAATGCCATCGCTTGCC 1313 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607 || ||||| || | |||||||| | ||| || |||||| || | || | ||| Sbjct 1314 GCGAAGAAAGCCAACACATGTTTGATGAAGTGTCGCTCGCCGTCGTCCAGCTTCTCCCA- 1372 Query 48608 CCCTGT-ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGA 48650 |||| | ||| || || ||||| | ||| ||||| ||||||| Sbjct 1373 ATCTGTCATGTCATTCCCAAGGTCGATTTCCTCCACCGTCCAGA 1416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931509208931840