Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1459 196 3e-44 seq138 96.9 2e-14 >seq1459 Length=76451 Score = 196 bits (216), Expect = 3e-44 Identities = 412/604 (68%), Gaps = 23/604 (4%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || || |||||| | || || |||||| || || | ||| | |||||| | | Sbjct 50115 GCGATCGGCATTGATCTTGGCACAACTTACTCGTGCGTGGGTGTGTTCAAAAATGATCAG 50056 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| | ||||| || || ||||| | |||||||| || ||||| || || | | Sbjct 50055 GTTGAAATTGTCGCCAACGATCAGGGTAACCGCACAACACCTTCTTATGTGTCCTTCAGT 49996 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 |||||||| | || |||| ||||| || || |||||| || || || ||| Sbjct 49995 GAAACTGAGCGACTGGTTGGCGATGCCGCAAAGAATCAAGTGGCCATGAACCCAACAAAT 49936 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCA---CTGTCCAA 474565 || | |||||||| || || | ||||| || || | |||||| ||| ||| ||| Sbjct 49935 ACGGTGTTTGATGCCAAGCGAATAATTGGCCGAAAATATGATGAC-CCAGACCTG--CAA 49879 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTT---GGTGGTAAACCATATATA 474622 |||| ||| |||||||| |||||||| || ||| | || ||||| | | Sbjct 49878 GCTGACATGAAACATTGGCCCTTTAAGGT---AACTGTGAAGGAAGGGAAACCGGTTGTG 49822 Query 474623 GAAGCAATACACGCAGGTGAAACTA-AACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | | || |||||| | | ||| ||||| ||| || | || | | ||||| Sbjct 49821 GAGGTAGAGTACCAAGGTGAGAGGAGAACCTTTTTCCCCG-AAGAGATAAGTGCGATGGT 49763 Query 474682 TTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAG-TAACTGATGCAG 474740 || |||||||| ||| |||| || || ||||| | ||||| || | | || | Sbjct 49762 CTTGCAGAAAATGAAGGAAATCGCGGAATCCTACCTTGG-CGAGAAGGTATCAAAGGCCG 49704 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | | ||||| || || ||||| || || || |||||||||||||| ||||| |||||| Sbjct 49703 TCGTGACTGTGCCTGCGTATTTCAACGACTCGCAACGTCAAGCAACAAAAGACGCGGGAT 49644 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 |||||| |||||| | || || || || |||| ||||||||||| || || |||| | Sbjct 49643 CAATTGCTGGTCTTGAGGTGTTGCGCATCGTTAACGAACCAACAGCCGCAGCCATTGCGT 49584 Query 474861 ATGGTCTTGATAAGAATTCTGA-----CAAAGAAGTAAATGTTTTAATCTTTGATTGTGG 474915 |||| | || | | |||||| ||| |||| | || | ||||||||| ||| Sbjct 49583 ATGGCATGGACAGAAGTTCTGAAGGAGCAATGAAG--ACGGTGCTCATCTTTGATCTTGG 49526 Query 474916 AGGT 474919 |||| Sbjct 49525 AGGT 49522 >seq138 Length=26409 Score = 96.9 bits (106), Expect = 2e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 || ||||| || || |||||||| ||||| ||||| |||| ||| | | || |||||| Sbjct 13950 GACTTTTCTTCGCCGAATATTGCCAAGGAGATGCACGTTGGCCACCTCCGTTCCACAATA 13891 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 || ||||| | ||||| | | | ||||||||| || ||| || || | || || Sbjct 13890 ATCGGTGAGGCCATTTGTCGCCTGTTTGAATTTTGCCAATATGAGGTTCATCGCATCAAC 13831 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAAT 817257 |||||||||||||||||||| || || ||||| || Sbjct 13830 CATATTGGTGATTGGGGAACTGCGTTCGGGATGTTGAT 13793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268092295029848