Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq676 98.7 1e-15 >seq676 Length=123097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| || || ||||| | ||| || || ||||||||||| | | Sbjct 113245 CATTGCCTCAGCACAAGCGGTTGCCTGATCCAAGAGGGATGCGTTTGCGACATCCATCTT 113186 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| || ||||| || | ||||||| | || || || | |||||| | || |||||||| Sbjct 113185 TGTCAGATCTGTTATCATCGTTTGGAAGTTTAACAACGATTCCAAACGACCTTGAGATAT 113126 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||| || ||||| || ||||| | || ||||| | |||||| |||| ||||| || | Sbjct 113125 CTCGGCCTGATACGGCGTGTACGGCGTATACCACCCAGGATTTTCAATGACGTTGCGAAG 113066 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 | |||| ||| || || | ||||| ||||| || || Sbjct 113065 AAGTACTGAGGGAGTTATACACTCGTAGTAACCTTGTCCGAT 113024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578983736865520