Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq790 98.7 1e-15 >seq790 Length=43444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 250/371 (67%), Gaps = 16/371 (4%) Strand=Plus/Plus Query 47956 GTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCA 48015 || ||||| | ||| || || | ||| || ||||| || || || || || || ||||| Sbjct 28127 GTGACAAACGCTTCGCCTCGACGTGGGGACTCATGGTTGAACAGTATTCCGTTAGAGGCA 28186 Query 48016 TACATTCCGTATGATTCACGATAGTTCTTTACT-ATCCAGTACCCATAGAGTTTTGCAAC 48074 |||| | || || ||||||||||| | | | ||||| | ||| ||||| || || Sbjct 28187 AACATATCATACGACTCACGATAGTT-TACAGTAATCCAATGTGAATACAGTTTGGCCAC 28245 Query 48075 ACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTT 48134 | | || || |||||||| || || || |||| ||||| || | |||||| || || Sbjct 28246 AGCGTACGGGCTCCGTGGATAAAATGGGGTCCTCTCCGTCTGCGGGGCCTCTTGGACATT 28305 Query 48135 ACCATAAAGTTCACTGGTGGATGCTTGAT-AGATACGAACCCTATCTTCCATCTCAAGC- 48192 ||||| | |||||| | || |||| | || | | | | ||| ||| |||| Sbjct 28306 CCCATACAATTCACTACTACTAGCCTGATAAAATTTG---CATGTTTTC--TCT-AAGCC 28359 Query 48193 ----AAACGGACTGCCTCAAGCACTCTCAG-GGTGCCTATGGCATCTGTCTGACCAGTAT 48247 |||| | ||||| || | ||| | || || | ||||| |||| ||||| | Sbjct 28360 GGTGGAACGTATAGCCTCGAGGA-TCTTTGCCGTACCCAGTGCATCCGTCTCTCCAGTGT 28418 Query 48248 ACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCAT 48307 | | || ||||||| || | ||||||||| |||||| ||||||| || | |||| Sbjct 28419 AAACTGGAGTCTCAAAAGAGATCTTTACATGCGACTGTGCTGCAAGATTGTACACTTCAT 28478 Query 48308 CTGGTTGAACC 48318 |||| |||| Sbjct 28479 GAGGTTTAACC 28489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665477546354320