Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq763 132 6e-26 seq1878 131 2e-25 >seq763 Length=1889 Score = 132 bits (146), Expect = 6e-26 Identities = 349/519 (67%), Gaps = 24/519 (5%) Strand=Plus/Minus Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC 65070 || ||||||||||| ||||| |||||||| || ||||| ||| || || || || Sbjct 1117 CCGTGTATTGAGAAAAAGGCCAAATGGGCGATTGAATGGATTGGCAGTCAGACT---TCG 1061 Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||| | ||| || | ||||||||| ||| || || || || ||||| || || ||| Sbjct 1060 TTCCCTACGCGGCTCGTCGCGTTTGCGGCTGTCGAAGGCATATTTTTCTCTGGCTCGTTC 1001 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| |||| |||||| |||||||| || | ||||| || || |||| || || Sbjct 1000 TGCGCCATTTTTTGGTTAAAGAAGCGTGGCTTGATGCCCGGGCTCACCTTCAGCAACGAG 941 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTT---CAAGA-- 65245 || ||||| || ||||||||||| ||| || |||| | || || || | ||| Sbjct 940 CTGATTTCACGTGATGAGGGTCTGCACACTGACTTTG-CTTG--CCTATTATACGAGAAG 884 Query 65246 CTTTGCGTAATAGACCCACTACCGA---AAC-TATCCACGCCATCGTGAAAGAGGCGGTT 65301 | ||||| || || |||| | | | | | | || | | || || Sbjct 883 TATATCGTAA---ACAAGCTGCCGAGGGATCGTGTGCTTGAAATTATATGCAATGCAGTA 827 Query 65302 GAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATC-TCATCGGTATGAACTC 65360 |||||| || |||||| | || ||| | || ||| | | || || ||||| || Sbjct 826 TCAATTGAGCGAGAGTTCATTTGCGATGCATTACC-TGTCCGCTTAATTGGAATGAATTC 768 Query 65361 TGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT 65420 | || |||| | |||||||||||| ||| | ||||| ||||| ||||||| Sbjct 767 TCAGCTGATGACTCAGTACATTGAGTTTGTCGCCGATCGGCTCCT-GGTGTCCTTGGGGT 709 Query 65421 GCCACC--CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGAT 65478 | ||| || || ||| ||||||| ||||||||||| ||||| | ||| ||| | Sbjct 708 ACGACCGTCA-TTACAACTCGAAGAACCCATTTGACTTCATGGATATGATTTCTCTTCAG 650 Query 65479 GGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTAT 65517 ||||| || ||||| || |||||| ||||| || ||| Sbjct 649 GGGAAAACTAACTTTTTCGAGAAGAAGGTTGGTGAGTAT 611 >seq1878 Length=84023 Score = 131 bits (144), Expect = 2e-25 Identities = 340/512 (66%), Gaps = 16/512 (3%) Strand=Plus/Minus Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 |||||||||||||||||| ||||| ||| ||| || || ||| | || || || || Sbjct 21556 TATGCTTTACAAGGATGCATGTAATTTCAAGTCTAATCAGAAAAATCTCGGCACGATTAA 21497 Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 |||||||| | |||||||||||| | |||||||| | ||| ||| ||| || || Sbjct 21496 ATGCTCAAATTTGTGCACGGAAATTGTCGAGTACACTTCGAGGGACGAGGTGGCCGTATG 21437 Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTA 76101 ||| | || || || |||||||| | ||| || || | || | ||||| || Sbjct 21436 CAACCTAGCCTCTATTGCCCTTCCGCGTTTTGTGAAGGA------TGGCGCATTTGACTA 21383 Query 76102 TGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAG 76161 | | | | || | |||||| |||| |||| |||||| ||||| || ||||| | Sbjct 21382 CGTTGCATTGAAGGAGGTGACAAAGGTTGTGACCAGAAATCTTAACCGGGTGATTGATCG 21323 Query 76162 AAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTT 76220 || ||||| || || || || ||| | |||| || | || | ||| | ||| Sbjct 21322 CAACCACTATCCAGTGTGTGA-GGCCCGATACAGTAATTTGAGGCATCGCCCTGTGGGTA 21264 Query 76221 TGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTTGATTCAGA- 76278 | ||||| || || || ||||||| ||| || | | || | |||| | || | Sbjct 21263 TCGGTGTCCAGGGACTGGCGGATGCGTTTGCACTGCTTTCCCTGC-CATTCG---CACAC 21208 Query 76279 --TGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAG 76336 || || ||| || ||||| | ||||| || ||||| || ||| | |||| Sbjct 21207 CCCGAGGCAAAGAAGTTGAATAGACAAATCTTCGAGACCATTTACTTTGCAGCTGTGGAA 21148 Query 76337 GCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCG 76396 || ||| |||||||||||| | || ||||||| || ||| | || || || Sbjct 21147 GCAAGTACGGAATTGGCTGAAAAGGACGGGCCCTATGAAACGTTTAAAGGAAGCCCTGCT 21088 Query 76397 TCCCAAGGGGTGCTTCAGTTTGATATGTGGGA 76428 || ||||| || ||||||||| ||||||| Sbjct 21087 TCGGAAGGGAAACTGCAGTTTGATCTGTGGGA 21056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596554491874880