Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq763 129 2e-24 seq1878 109 2e-18 >seq763 Length=1889 Score = 129 bits (142), Expect = 2e-24 Identities = 293/434 (68%), Gaps = 15/434 (3%) Strand=Plus/Minus Query 133229 TTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAA--TTTAGGAACACGGTTTA 133286 || || || || || || || ||||| ||||| || || || || ||||| |||| | Sbjct 1327 TTGGCTTTCTTCGCGGCAAGCGATGGCATTGTGCTGGAGAACCTTGCGGAAC--GGTTCA 1270 Query 133287 TGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAA 133346 || | ||||| || | | |||| || || |||||| | |||||||| ||||||| Sbjct 1269 TGTGCGAAGTGCAGGTACCTGAAGTTCGATGTTTCTATGGGTTCCAGATTGCTATGGAAA 1210 Query 133347 ATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGA 133406 ||||||||||| ||||| || | || ||||| || | ||| ||| | | | Sbjct 1209 ATATCCATTCTGAGACATACTCCGTGTTGATCGATACGTATGTTGTGGATCCCGACGAAA 1150 Query 133407 AGCACAAACTATTCAACGCCATTAG--CGAATTTCCTTGTATTAAAAAGAAATCTGACTG 133464 |||| ||| | | ||||| || ||| |||| |||||| | || || | | || Sbjct 1149 AGCAACGACTGCTACATGCCATAAGGACGA--TTCCGTGTATTGAGAAAAAGGCCAAATG 1092 Query 133465 GGCTATTAAATGGAT--CCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTT 133522 ||| ||| ||||||| ||| || | || || |||| || ||||| || ||| Sbjct 1091 GGCGATTGAATGGATTGGCAG--TCAGACTTCG---TTCCCTACGCGGCTCGTCGCGTTT 1037 Query 133523 GCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAG 133582 || | || || ||||| |||||| ||| |||||||| | ||||||||| | || ||| Sbjct 1036 GCGGCTGTCGAAGGCATATTTTTCTCTGGCTCGTTCTGCGCCATTTTTTGGTTAAAGAAG 977 Query 133583 CGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTT 133642 ||||| | | || || || || ||||| || |||||| | || |||| || Sbjct 976 CGTGGCTTGATGCCCGGGCTCACCTTCAGCAACGAGCTGATTTCACGTGATGAGGGTCTG 917 Query 133643 CACACCGAATTTGC 133656 ||||| || ||||| Sbjct 916 CACACTGACTTTGC 903 >seq1878 Length=84023 Score = 109 bits (120), Expect = 2e-18 Identities = 617/976 (63%), Gaps = 38/976 (4%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCG-TCGC--TGTATTCTACAATCT 155643 ||||||| || || || ||||| || | ||| ||| ||| |||| || ||||| | Sbjct 21420 CAATAGAGGCTAGGTTGCATACGGC---CACCTCGTCCCTCGAAGTGTACTCGACAATTT 21476 Query 155644 CACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTAC 155703 | ||||| || || | || || ||||| | ||| ||||| ||||| || |||| Sbjct 21477 CCGTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTTCTGATTAGACTTGAAATTAC 21536 Query 155704 AAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTA 155763 | ||||||||||| || || | || || || |||| ||| | || || || | Sbjct 21537 ATGCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTCCACCTGAGACTCAAGGATAAGGA 21596 Query 155764 GCCAGAGGTCACGGGCATTAATT-TGCTTGTTGTATCTGCCTTCCGACTCATATT--TCA 155820 ||| || || |||| | ||| | ||| | | |||||| |||||| ||| Sbjct 21597 ACCACAGTTCCTGGGCCTGAATAGTTCTTACGCCA-CGACCTTCCCTTTCATATCGCTCA 21655 Query 155821 TATACAGCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGG 155878 |||| | || |||| || | || ||||| ||||||| ||| | | | ||| Sbjct 21656 TATAAA----TCAGTAAACTCTTGGCCATAACAGTCACTCAAAAAGGGGGCCGTGTTGGG 21711 Query 155879 GCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCA 155938 | | |||| |||| | || || || || |||||||| | ||| ||| Sbjct 21712 GTCCATAAGCGTCCAAGTCCCATGACTCTCAACTCGTTCCATAAACAGGTCAGGAATCCA 21771 Query 155939 AATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCT 155997 | | | || || | ||||| || | ||| ||||| | ||| ||| ||| || Sbjct 21772 CAGACCGTAAAACAAGTCCCGCGCACGCTGA-TCCTCCTTGCCCGTATTTTTCTTCAGAA 21830 Query 155998 CTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC 156057 | ||| | ||||| | || ||||||| ||| |||||||| || || | Sbjct 21831 GGAGGAAACCAAAGATATCCGCGTGCCAGGGCTCCAAATAAATAGCAAAGGCGCCCTTGC 21890 Query 156058 TCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAA 156114 ||||||||| ||| || ||||| |||||||| ||||| | |||| ||||| || | Sbjct 21891 GCTTGCCACCGCCCTGGTCAACATAGCGAGCAGTGTTATTCCACACACGAAGCATGGGGA 21950 Query 156115 TAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTAT 156174 | |||||| || || ||||| || ||| || | || | || ||||| || | Sbjct 21951 CCAGACCATTCGACGTACCATTTGTCCCGGCGATGTAGCTCCCCGCTGCGCGAATGTTGT 22010 Query 156175 GAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTAT 156234 | || || | || || ||||| | |||| || || || | || | || | Sbjct 22011 GCATGTGGATCCCGATCCCACCAGCTGATTTGCTGATGATCGCACACTGTTTGAGTGTGT 22070 Query 156235 TGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAG 156294 | | || || |||||| || || ||| | || ||| |||| ||||| | ||| | Sbjct 22071 CGTAGATGCCATCAATACTGTCTTCACGCATAGCTACAAGAAAGCATGAACTCATTTGTG 22130 Query 156295 GTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACA 156354 | ||| || || || ||||||| || || || || || ||||| || | |||| Sbjct 22131 GGAATGGGGTCCCCGCATTGAATAACGTTGGAGTAGCGTGGGTAAAAAACCCTTGCGACA 22190 Query 156355 TATAATCGTATGTCTCCTT-AATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACC 156413 | || || ||||||||||| | | | |||| | || || |||| || | || Sbjct 22191 TGTAGTCATATGTCTCCTTCACACGTTCCAAG-TCCTCTCCATGGATACCGAGGGCAACA 22249 Query 156414 CTCATCCACATATGCTGAGGACGCT------CTACAATCACTCC---------ATCAATT 156458 | || |||| || || ||||||| || | || ||||| ||| | Sbjct 22250 CGCAGGAACATCTGTTGTGGACGCTCCACCACTTCCATAACTCCCCGCCCCTTATCGACA 22309 Query 156459 CGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGG 156518 || || ||||| | || || || || || |||||||||| ||||| |||||| || Sbjct 22310 CGAAGGAGGTAAGAACGCTCAAGTGTCTTGTACCCGAAATACTCAAAATCAAAATCCCGC 22369 Query 156519 TTGTAATCAATCATTT 156534 | ||||| ||| |||| Sbjct 22370 TCGTAATTAATGATTT 22385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471779394374762