Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq763 120 4e-21 seq1878 105 8e-17 >seq763 Length=1889 Score = 120 bits (132), Expect = 4e-21 Identities = 190/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 869195 ATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 869254 |||| |||||||| |||| ||| |||||||| | ||| |||||||| | |||||| ||| Sbjct 936 ATCAGCTCGTTGCTGAAGGTGAGCCCGGGCATCAAGCCACGCTTCTTTAACCAAAAAATG 995 Query 869255 GCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGC-TC 869313 |||||||| ||| |||||||| ||||| ||||| || ||||| ||| ||||||| | Sbjct 996 GCGCAGAACGAGCCAGAGAAAAATATGCCTTCGACAGCCGCAAACGCGACGAGCCGCGTA 1055 Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCT 869373 || || ||| | || || ||||| | |||||||| | |||||||||| Sbjct 1056 GGGAA------CGAAG-TCTGACTGCCAATCCATTCAATCGCCCATTTGGCCTTTTTCTC 1108 Query 869374 CACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGAC 869433 | |||| | ||| ||||| | | || | | ||||||| | || ||| || Sbjct 1109 AATACACGGAATCGTCCTTATGGCATGTAGCAGTCGTTGCTTTTCGTCGGGATCCACAAC 1168 Query 869434 ATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| || ||||||| | || || ||||| Sbjct 1169 ATACGTATCGATCAACACGGAGTATGTCTC 1198 Score = 114 bits (126), Expect = 2e-19 Identities = 203/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| || || || || |||||||| || || || | || || | || || Sbjct 1200 GAATGGATATTTTCCATAGCAATCTGGAACCCATAGAAACATCGAACTTCAGGTACCTGC 1259 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||||||||| | || |||||||| ||| ||||| ||||| || ||||| Sbjct 1260 ACTTCGCACATGAACCGTTCCGCAAGGTTCTCCAGCACAATGCCATCGCTTGCCGCGAAG 1319 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||||| || || ||||| ||||| |||||| ||||| ||| | |||| | Sbjct 1320 AAAGCCAACACATGTTTGATGAAGTGTCGCTCGCCGTCGTCCAGCTTCTCCCAATCTGTC 1379 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| | ||||| | ||||| | |||||||| | ||| |||| |||||| Sbjct 1380 ATGTCATTCCCAAGGTCGATTTCCTCCACCGTCCAGATGCTGCTCTCCGCCTCCTTGTAC 1439 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||| ||||| | |||| ||||||||||| || |||||| |||||| || Sbjct 1440 TTCTGCCATATGTCAGGGTACTTGATAGGGAAGATAACGTAGCGGTCGGGGTTTTC 1495 >seq1878 Length=84023 Score = 105 bits (116), Expect = 8e-17 Identities = 205/303 (68%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| || ||||| || |||| || | || || |||||||| || || || || Sbjct 21901 GCCCTGGTCAACATAGCGAGCAGTGTTATTCCACACACGAAGCATGGGGACCAGACCATT 21960 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| || || || || || | |||| || || ||||| | |||||| | | Sbjct 21961 CGACGTACCATTTGTCCCGGCGATGTAGCTCCCCGCTGCGCGAATGTTGTGCATGTGGAT 22020 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||||| || || || || ||| ||||| ||| ||||||||||| |||||||||||||| Sbjct 22021 CCCGATCCCACCAGCTGATTTGCTGATGATCGCACACTGTTTGAGTGTGTCGTAGATGCC 22080 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || ||| | ||| | || |||||||| || |||| ||| | || Sbjct 22081 ATCAATACTGTCTTCACGCATAGCTACAAGAAAGCATGAACTCATTTGTGGGAATGGGGT 22140 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 || || ||||| | ||| || || || ||| || ||| |||||||| ||| || Sbjct 22141 CCCCGCATTGAATAACGTTGGAGTAGCGTGGGTAAAAAACCCTTGCGACATGTAGTCATA 22200 Query 1630362 GGT 1630364 || Sbjct 22201 TGT 22203 Score = 91.5 bits (100), Expect = 2e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 |||||| |||||| ||||||| ||||||| | ||| ||||| || | |||||||| Sbjct 21751 CATAAACAGGTCAGGAATCCACAGACCGTAAAACAAGTCCCGCGCACGCTGATCCTCCTT 21810 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 ||| || || || || ||| | | | || || |||||||| ||||||| || Sbjct 21811 GCCCGTATTTTTCTTCAGAAGGAGGAAACCAAAGATATCCGCGTGCCAGGGCTCCAAATA 21870 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||||||||||||||||||||| ||||| Sbjct 21871 AATAGCAAAGGCGCCCTTGCGCTTGCCACCGCC 21903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106972936952242