Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1149 131 2e-25 seq763 93.3 4e-14 seq1878 84.2 2e-11 >seq1149 Length=36903 Score = 131 bits (144), Expect = 2e-25 Identities = 180/248 (73%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| || || || ||||| ||| | || || || || ||| Sbjct 9831 ACCATGCAGATCTTCGTGAAAACCCTCACTGGCAAAACCATTGCTCTTGAGGTTGAGGCC 9772 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | ||||| ||||| || ||||| || || || ||||| ||| Sbjct 9771 AGCGACACCATTGAGAACGTAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCGGAT 9712 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATT 24878 || || || ||||| ||||||||||| ||| ||||||| ||| | | || | || | Sbjct 9711 CAGCAGCGGTTGATTTTTGCCGGGAAGCAGTTGGAGGAGGGTCG-CACGCTTG-CGGACT 9654 Query 24879 ATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTG 24938 | |||||||| ||||| |||||||| ||| |||| | || | || || || | | | Sbjct 9653 ACAACATTCAGAAGGAGTCGACACTGCACCTGGTACTCCGCCTTCGAGGTGGTGTGATGG 9594 Query 24939 AGCCAACG 24946 |||||||| Sbjct 9593 AGCCAACG 9586 >seq763 Length=1889 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 126046 GTGGAAGGCGTGTTTTTCTCGGG-TAGTTTTGCGGCTAttttttttATAAAGACAAAGGG 126104 || |||||| | |||||||| || | ||| |||| | ||||||| |||||| || Sbjct 1030 GTCGAAGGCATATTTTTCTCTGGCTCGTTCTGCGCC-ATTTTTTGGTTAAAGAAGCGTGG 972 Query 126105 TATAATGCCCGGTCTAACGTTCAGCAACGAGTTGATTTCTCGTGACGAAGGACTCCATAC 126164 | |||||||| || || |||||||||||| ||||||| ||||| || || || || || Sbjct 971 CTTGATGCCCGGGCTCACCTTCAGCAACGAGCTGATTTCACGTGATGAGGGTCTGCACAC 912 Query 126165 GGACTTTGCATGTCTGTATTACAATAATTATAT 126197 |||||||| || || | ||| | || ||||| Sbjct 911 TGACTTTGCTTGCCTATTATACGAGAAGTATAT 879 >seq1878 Length=84023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGC--TGTATTCGACAATTTCG 139137 ||| ||||||| |||||| || ||||| ||||| ||| |||| ||||||||||| Sbjct 21421 AATAGAGGCTAGGTTGCATACGGCCACCTCGTCCC--TCGAAGTGTACTCGACAATTTCC 21478 Query 139138 GCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAA 139197 | |||||||| || || ||||| || | ||||| ||||| || ||||| Sbjct 21479 GTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTTCTGATTAGACTTGAAATTACAT 21538 Query 139198 GCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTC 139244 ||||| |||||||||||| | || || |||||||| || | ||| Sbjct 21539 GCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTCCACCTGAGACTC 21585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449886206343280