Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq763 131 3e-24 seq1878 96.9 5e-14 >seq763 Length=1889 Score = 131 bits (144), Expect = 3e-24 Identities = 218/314 (69%), Gaps = 12/314 (4%) Strand=Plus/Plus Query 794356 ATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATG 794415 |||| |||||||| ||| ||| |||||||| | ||| |||||||| | |||||| ||| Sbjct 936 ATCAGCTCGTTGCTGAAGGTGAGCCCGGGCATCAAGCCACGCTTCTTTAACCAAAAAATG 995 Query 794416 GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGC-TC 794474 || ||||| ||| |||||||| ||||| ||||| || ||||| ||||||||||| | Sbjct 996 GCGCAGAACGAGCCAGAGAAAAATATGCCTTCGACAGCCGCAAACGCGACGAGCCGCGTA 1055 Query 794475 GGCAA--AAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTC 794532 || || |||| || || ||||| | |||||||| | ||||||||| Sbjct 1056 GGGAACGAAGT---------CTGACTGCCAATCCATTCAATCGCCCATTTGGCCTTTTTC 1106 Query 794533 CTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTG 794592 | | || | ||| ||||| | | || | | ||| ||| | || ||| Sbjct 1107 TCAATACACGGAATCGTCCTTATGGCATGTAGCAGTCGTTGCTTTTCGTCGGGATCCACA 1166 Query 794593 ACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGG 794652 || || || ||||| | | ||||| ||||| || ||||| ||||| || || |||||| Sbjct 1167 ACATACGTATCGATCAACACGGAGTATGTCTCAGAATGGATATTTTCCATAGCAATCTGG 1226 Query 794653 AAGCCATAAAAGCA 794666 || ||||| || || Sbjct 1227 AACCCATAGAAACA 1240 >seq1878 Length=84023 Score = 96.9 bits (106), Expect = 5e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 |||||||||||| ||||||| |||||||| | || ||||| || | |||||||| Sbjct 21751 CATAAACAGGTCAGGAATCCACAGACCGTAAAACAAGTCCCGCGCACGCTGATCCTCCTT 21810 Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979 ||| || || ||||| ||| | | | || || |||||||| ||||||| || Sbjct 21811 GCCCGTATTTTTCTTCAGAAGGAGGAAACCAAAGATATCCGCGTGCCAGGGCTCCAAATA 21870 Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||||||||||||||||||||| ||||| Sbjct 21871 AATAGCAAAGGCGCCCTTGCGCTTGCCACCGCC 21903 Score = 86.0 bits (94), Expect = 1e-10 Identities = 179/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| |||||||| || |||| || | || || |||||||| || || || || Sbjct 21901 GCCCTGGTCAACATAGCGAGCAGTGTTATTCCACACACGAAGCATGGGGACCAGACCATT 21960 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| || || || || || | |||| |||| ||||| | |||||| | | Sbjct 21961 CGACGTACCATTTGTCCCGGCGATGTAGCTCCCCGCTGCGCGAATGTTGTGCATGTGGAT 22020 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||||| || || || | ||| ||||| ||| |||| ||| || || ||||||||||| Sbjct 22021 CCCGATCCCACCAGCTGATTTGCTGATGATCGCACACTGTTTGAGTGTGTCGTAGATGCC 22080 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 || || ||| | ||| | | |||||||| || |||| ||| | || Sbjct 22081 ATCAATACTGTCTTCACGCATAGCTACAAGAAAGCATGAACTCATTTGTGGGAATGGGGT 22140 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 || |||||||| | ||| || || || Sbjct 22141 CCCCGCATTGAATAACGTTGGAGTAGC 22167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916030885139414