Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq192 84.2 4e-11 >seq192 Length=172908 Score = 84.2 bits (92), Expect = 4e-11 Identities = 138/196 (70%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 143985 GATCCAGTCTTGCATATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCC-CTT 144043 ||| |||| ||||||| || ||| | |||||||| || || | | ||||| || ||| Sbjct 107864 GATGCAGTGATGCATATTGAGCTTCGTAGATGGGCAGACATTGTCGTCATAGCCCCTCTT 107805 Query 144044 AACAGCAAATACGTTAGCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTAT 144103 || || ||||| ||||| ||| | || |||||| || |||||| | | |||| | | Sbjct 107804 GAC-GCTAATACATTAGCGAAATTGGCTGTTGGTATGTGTGATAATCTCGTTACATGTGT 107746 Query 144104 AGTAAGAGCCTGGGATATA---AATAAACCTCTTATTTTTTGCCCCGCTATGAATACCCT 144160 | |||| ||||| || || |||||| | | || || || |||||||||||| Sbjct 107745 TATGCGAGCGTGGGAGGTACGCAAGAAACCTGTGGTGTTGTGTCCAGCTATGAATACCGC 107686 Query 144161 TATGTGGGAACATCCT 144176 |||||| |||||| Sbjct 107685 CATGTGGACGCATCCT 107670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981801713606814