Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1878 114 1e-20 seq763 93.3 4e-14 >seq1878 Length=84023 Score = 114 bits (126), Expect = 1e-20 Identities = 562/879 (64%), Gaps = 29/879 (3%) Strand=Plus/Plus Query 148820 GGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTC 148879 ||| ||||||||||| ||||| |||||| ||| ||| | ||||||| || || || Sbjct 21418 GGCAATAGAGGCTAGGTTGCATACGGCCACCTCGTCCCTCGAAGTGTACTCGACAATTTC 21477 Query 148880 GGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 | ||||| ||| |||||| ||| ||| | || || ||||| |||| || || Sbjct 21478 CGTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTTCTGATTAGACTTGAAATTACA 21537 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAA 148996 || |||||||| ||||| | || | || ||||||||||| | || | || ||| Sbjct 21538 TGCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTCCACCTGAGACTCAAGGATAAGGAA 21597 Query 148997 CCGATGCAGGTCCTGCGCGCGCACTTGCTGCT-CGTAGCGACCCTCCTGCTCGTATAAAG 149055 || ||| ||||| || | | | | | | || ||||| ||| || ||| Sbjct 21598 CCA---CAGTTCCTGGGCCTGAA-TAGTTCTTACGCCACGACCTTCCCTTTCATATCGCT 21653 Query 149056 --TATACAGCCGCTCGAACGCCTCGCCGTAGCAATCG-TCGAGACCGGGGCACTTGTGCG 149112 |||| | | | ||| | | ||| || || || || | | ||||| | ||| | Sbjct 21654 CATATAAATCAGTA--AACTCTTGGCCATAACAGTCACTCAAAAAGGGGGC-CGTGTTGG 21710 Query 149113 GGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCC 149172 || ||| |||| ||| || | | || || | ||||||||| || || | || Sbjct 21711 GGTCCATAAGCGTCCAAGTCCCATGACTCTCAACTCGTTCCATAAACAGGTCAGGAATCC 21770 Query 149173 AGAGCGCGTACATGAGGTCGCGCGCCTTGCAG-TCTTCGGCGCCCATGTTGCGGCGCAGG 149231 | || |||| | | ||| ||||| || | || || |||| | || ||| Sbjct 21771 ACAGACCGTAAAACAAGTCCCGCGCAC-GCTGATCCTCCTTGCCCGTATTTTTCTTCAGA 21829 Query 149232 TTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTG 149291 ||| | | || || ||||||||||| ||||| | || | || | ||||||||| Sbjct 21830 AGGAGGAAACCAAAGATATCCGCGTGCCAGGGCTCCAAATAAATAGCAAAGGCGCCCTTG 21889 Query 149292 CGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGT 149348 |||||| ||||||||||| || | ||| | |||| || |||| |||| ||| || Sbjct 21890 CGCTTGCCACCGCCCTGGTCAACATAGCGAGCAGTGTTATTCCACACACGAAGCATGGGG 21949 Query 149349 TCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGC-GCTCGCACTTT 149407 | | ||| | | || || || || | ||| || || ||| || || | || Sbjct 21950 ACCAGACCATTCGACGTACCATTTGTCCCGGCGATGTAGCT-CCCCGCTGCGCGAATGTT 22008 Query 149408 GTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGT 149467 ||||| || || ||||| || || | | || |||| ||| || | ||| || Sbjct 22009 GTGCATGTGGATCCCGATCCCACCAGCTGATTTGCTGATGATCGCACACTGTTTGAGTGT 22068 Query 149468 CGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGC----AGAAAGCACGAGCACA 149523 ||||||||| || || |||| ||||| | ||| |||||||| || | || Sbjct 22069 GTCGTAGATGCCATCAATACTGT----CTTCACGCATAGCTACAAGAAAGCATGAACTCA 22124 Query 149524 TTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCT 149583 |||| || || | || || || ||| | || || | ||||| |||||| | | Sbjct 22125 TTTGTGGGAATGGGGTCCCCGCATTGAATAACGTTGGAGTAGCGTGGGTAAAAAACCCTT 22184 Query 149584 GGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643 | ||| || || | ||| ||| || |||| ||| || |||||||| || | || Sbjct 22185 GCGACATGTAGTCATATGTCTCCTTCACACGTTCCAAGTCCTCTCCATGGATACCGAGGG 22244 Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTT 149682 | || |||| | ||| || || || |||||| |||||| Sbjct 22245 CAACACGCAGGAACATCTGTTGTGGACGCTCCACCACTT 22283 >seq763 Length=1889 Score = 93.3 bits (102), Expect = 4e-14 Identities = 168/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 120607 GGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCC 120666 |||| ||||| | |||| | | ||| | ||||| |||||||| |||||||| ||| Sbjct 864 GGCAGCTTGTTTACGATATACTTCTCGTATAATAGGCAAGCAAAGTCAGTGTGCAGACCC 923 Query 120667 TCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTG 120726 || || || || |||||||||||||| || || || |||||||| | ||| | |||| Sbjct 924 TCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGCCCGGGCATCAAGCCACGCTTCTTT 983 Query 120727 ATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCG 120786 | | || |||||| || ||| || || || | ||| || || ||||| ||| Sbjct 984 AACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAATATGCCTTCGACAGCCGCAAACGCG 1043 Query 120787 ACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGGCC 120846 || | ||| | || || |||| ||| | ||||| | || ||||| | |||| Sbjct 1044 ACGAGCCGCGTAGGGAA---CGAAGTCTGACTGCCAATCCATTCAATCGCCCATTTGGCC 1100 Query 120847 TTTTT 120851 ||||| Sbjct 1101 TTTTT 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483408557368240