Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1149 98.7 7e-16 >seq1149 Length=36903 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||| | || | |||| || || || ||| || || |||||||| || | Sbjct 9600 CACCACCTCGAAGGCGGAGTACCAGGTGCAGTGTCGACTCCTTCTGAATGTTGTAGTCCG 9659 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || ||||| | || ||||| || || |||||||||||||| ||||||||||| | | Sbjct 9660 CAAGCGTGCGACCCTCCTCCAACTGCTTCCCGGCAAAAATCAACCGCTGCTGATCCGGAG 9719 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||| || ||||| ||| || | | || | || | ||||||||| | || Sbjct 9720 GGATACCCTCCTTGTCCTGAATCTT-GGCCTTTACGTTCTCAATGGTGTCGCTGGCCTCA 9778 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || |||| | || ||||| || || | ||||| || ||||||||||| || Sbjct 9779 ACCTCAAGAGCAATGGTTTTGCCAGTGAGGGTTTTCACGAAGATCTGCATGGT 9831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328695883681920