Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq763 210 3e-48 seq1878 96.9 5e-14 >seq763 Length=1889 Score = 210 bits (232), Expect = 3e-48 Identities = 398/578 (69%), Gaps = 11/578 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| || ||| || ||||| |||||| || | ||||| ||| |||| Sbjct 1510 GAGCCACTTCTGACAGAAAACCCCGACCGCTACGTTATCTTCCCTATCAAGTACCCTGAC 1451 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 |||||| | | |||| || |||| ||| | | | ||||| | ||||| ||||||| Sbjct 1450 ATATGGCAGAAGTAC-AAGGAGGCGGAGAGCAGCATCTGGACGGTGGAGGAAATCGACCT 1392 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 || |||| | | |||| | |||| ||||| |||||| || |||||||| || Sbjct 1391 TGGGAATGACATGACAGATTGGGAGAAGCTGGACGACGGCGAGCGACACTTCATCAAACA 1332 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 || | || ||| ||||| || ||||||||||| ||| |||||||| || | || | Sbjct 1331 TGTGTTGGC-TTTCTTCGCGGCAAGCGATGGCATTGTGCTGGAGAACCTTGCGGAACGGT 1273 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||| || || || | || || | || | || || ||||||||||| || || | Sbjct 1272 TCATGTGCGAAGTGCAGGTACCTGAAGTTCGATGTTTCTATGGGTTCCAGATTGCTATGG 1213 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 |||| ||||| ||||| || ||||| | ||||||| || || || ||| || | || Sbjct 1212 AAAATATCCATTCTGAGACATACTCCGTGTTGATCGATACGTATGTTGTGGATCCCGACG 1153 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 | ||| | | || | | ||||| ||| | |||| | |||||||||| | | Sbjct 1152 AAAAGCAACGACTGCTACATGCCATAAGGACGATTCCGTGTATTGAGAAAAAGGCCAAAT 1093 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGA-GCGGCTCGTCGGCT 1456194 ||||||| | ||||| | || | | ||| || || | ||||||||||| | Sbjct 1092 GGGCGATTGAATGGATTGGC-AGTCAGACTTCG-----TTCCCTACGCGGCTCGTCGCGT 1039 Query 1456195 TTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 |||| || ||||| ||||| |||||||| ||| ||||||||||| |||||| | |||| Sbjct 1038 TTGCGGCTGTCGAAGGCATATTTTTCTCTGGCTCGTTCTGCGCCATTTTTTGGTTAAAGA 979 Query 1456254 AGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGA 1456291 |||| ||| | |||||||| | || ||| |||||||| Sbjct 978 AGCGTGGCTTGATGCCCGGGC-TCACCTTCAGCAACGA 942 >seq1878 Length=84023 Score = 96.9 bits (106), Expect = 5e-14 Identities = 201/295 (68%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||||||| ||| || ||| || || || ||| | || ||||| || || || Sbjct 22192 CATGTCGCAAGGGTTTTTTACCCACGCTACTCCAACGTTATTCAATGCGGGGACCCCATT 22133 Query 259954 CCCGCAGAATTCGT-CGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 ||| || ||| || | |||||||| | | ||| | || || || ||||||| Sbjct 22132 CCCACA-AATGAGTTCATGCTTTCTTGTAGCTATGCGTGAAGACAGTATTGATGGCATCT 22074 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | ||||| ||||| ||||| ||| ||||| ||| | || || || ||||| | || Sbjct 22073 ACGACACACTCAAACAGTGTGCGATCATCAGCAAATCAGCTGGTGGGATCGGGAT--CCA 22016 Query 260073 CA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGG 260130 || ||||| | ||||| ||||| |||| | || || || || || ||| || || Sbjct 22015 CATGCACAACATTCGCGCAGCGGGGAGCTACATCGCCGGGACAAATGGTACGTCGAATGG 21956 Query 260131 CCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || || ||||||||||| || | || |||| || ||||| || |||||| || Sbjct 21955 TCTGGTCCCCATGCTTCGTGTGTGGAATAACACTGCTCGCTATGTTGACCAGGGC 21901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177615788576212