Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1149 113 5e-20 seq763 93.3 4e-14 >seq1149 Length=36903 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | || ||||| || || || ||||| |||||||||||||| || Sbjct 9602 CCACCTCGAAGGCGGAGTACCAGGTGCAGTGTCGACTCCTTCTGAATGTTGTAGTCCGCA 9661 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || | ||| || || ||||||||||| ||||||||||| || || Sbjct 9662 AGCGTGCGACCCTCCTCCAACTGCTTCCCGGCAAAAATCAACCGCTGCTGATCCGGAGGG 9721 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || || || || | |||||| | || || Sbjct 9722 ATACCCTCCTTGTCCTGAATCTTGGCCTTTACGTTCTCAATGGTGTCGCTGGCCTCAACC 9781 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||| ||||||||| || || | ||||| ||||| || ||||| Sbjct 9782 TCAAGAGCAATGGTTTTGCCAGTGAGGGTTTTCACGAAGATCTGCAT 9828 >seq763 Length=1889 Score = 93.3 bits (102), Expect = 4e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 21698 CGATGTATTTGTTGTAGTAGAGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAA 21757 |||| || || | ||| | || |||||||| | ||||||| ||||| || || |||| Sbjct 877 CGATATACTTCTCGTATAATAGGCAAGCAAAGTCAGTGTGCAGACCCTCATCACGTGAAA 936 Query 21758 TCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTG 21817 ||| ||||||||||| ||||| |||||||| || || || || || | |||||| || Sbjct 937 TCAGCTCGTTGCTGAAGGTGAGCCCGGGCATCAAGCCACGCTTCTTTAACCAAAAAA-TG 995 Query 21818 CCGCAAAGCTA-CCGGaaaaaaaCACGCCCTCCACAATGGCGAACGCCAC 21866 |||| | | | || || ||||| | ||| || ||| || ||||| || Sbjct 996 GCGCAGAACGAGCCAGAGAAAAATATGCCTTCGACAGCCGCAAACGCGAC 1045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505385600785520