Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1878 91.5 2e-13 >seq1878 Length=84023 Score = 91.5 bits (100), Expect = 2e-13 Identities = 283/438 (65%), Gaps = 0/438 (0%) Strand=Plus/Plus Query 69591 CTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCT 69650 || |||||||| |||||| || || |||||||| ||| | ||| | || | | | Sbjct 21739 CTCAACTCGTTCCATAAACAGGTCAGGAATCCACAGACCGTAAAACAAGTCCCGCGCACG 21798 Query 69651 ATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCA 69710 | || || || || |||||||| || ||| ||| || | | ||||| | ||||| Sbjct 21799 CTGATCCTCCTTGCCCGTATTTTTCTTCAGAAGGAGGAAACCAAAGATATCCGCGTGCCA 21858 Query 69711 TGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCT 69770 || || | ||| || || | | | ||| || || || ||||| || | || | Sbjct 21859 GGGCTCCAAATAAATAGCAAAGGCGCCCTTGCGCTTGCCACCGCCCTGGTCAACATAGCG 21918 Query 69771 GGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCC 69830 ||||||||||| | || | ||||| || | | |||||| || |||||||||| || Sbjct 21919 AGCAGTGTTATTCCACACACGAAGCATGGGGACCAGACCATTCGACGTACCATTTGTCCC 21978 Query 69831 AGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCAT 69890 | || || || || ||||||||| || || | || || || || || Sbjct 21979 GGCGATGTAGCTCCCCGCTGCGCGAATGTTGTGCATGTGGATCCCGATCCCACCAGCTGA 22038 Query 69891 TTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTAT 69950 ||| ||| | ||||| |||| | |||||| || || || || || || || || Sbjct 22039 TTTGCTGATGATCGCACACTGTTTGAGTGTGTCGTAGATGCCATCAATACTGTCTTCACG 22098 Query 69951 CATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGT 70010 ||| | |||||| || | |||||| | | || |||||||| ||||| || Sbjct 22099 CATAGCTACAAGAAAGCATGAACTCATTTGTGGGAATGGGGTCCCCGCATTGAATAACGT 22158 Query 70011 AGGAGATGCGTGAGTGAA 70028 |||| ||||| || || Sbjct 22159 TGGAGTAGCGTGGGTAAA 22176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686891404034640