Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq763 123 2e-23 >seq763 Length=1889 Score = 123 bits (136), Expect = 2e-23 Identities = 255/375 (68%), Gaps = 6/375 (2%) Strand=Plus/Minus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| || |||| |||| |||||||| |||||||| || ||||| || |||||||| Sbjct 1264 GAAGTGCAGGTACCTGAAGTTCGATGTTTCTATGGGTTCCAGATTGCTATGGAAAATATC 1205 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 ||||| || | ||| | |||| |||||||| | ||| |||| ||||| Sbjct 1204 CATTCTGAGACATACTCCGTGTTGATCGATACGTATGTTGTGGATCCCGACGAAAAGCAA 1145 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095 ||| || | |||| ||| || | || ||| | | || || | ||||| || Sbjct 1144 CGACTGCTACATGCCATAAGGACGATTCCGTGTATTGAGAAAAAGGCCAAATGGGCGATT 1085 Query 44096 AAATGGATAA--ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 ||||||| | ||| | ||| || || || ||||||||||| | ||| | Sbjct 1084 GAATGGATTGGCAGTCAGAC--TTCGTTCCCTACGCGGCTCGTCGCGTTTGCGGCTGTCG 1027 Query 44154 AAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG 44212 ||||||| || || || || ||||| |||| |||| |||||||||||||| || || ||| Sbjct 1026 AAGGCATATTTTTCTCTGGCTCGTTCTGCG-CCATTTTTTGGTTAAAGAAGCGTGGCTTG 968 Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272 ||||| ||| | || || || ||| | || |||||||| || | || || Sbjct 967 ATGCCCGGGCTCACCTTCAGCAACGAGCTGATTTCACGTGATGAGGGTCTGCACACTGAC 908 Query 44273 TTTGCTTGCTTGTTA 44287 ||||||||| | ||| Sbjct 907 TTTGCTTGCCTATTA 893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446186066130