Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq763 123 3e-23 seq1609 86.0 8e-12 >seq763 Length=1889 Score = 123 bits (136), Expect = 3e-23 Identities = 349/520 (67%), Gaps = 26/520 (5%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| || || ||| |||||| || ||||| || ||||| | ||| ||| | ||||| Sbjct 611 ATACTCACCAACCTTCTTCTCGAAAAAGTTAGTTTTCCCCTGAAGAGAAATCATATCCAT 670 Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGA 122487 ||||||||||| ||||||| ||| || || ||| | ||||||| ||||| Sbjct 671 GAAGTCAAATGGGTTCTTCGAGTTGTAA-TGACGGTCGTACCCCAAGGACACC-AGGAGC 728 Query 122488 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT- 122546 ||||| | ||| |||||||||||| | |||| || ||| ||||| || || | | Sbjct 729 CGATCGGCGACAAACTCAATGTACTGAGTCATCAGCTGAGAATTCATTCCAATTAAGCGG 788 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 ||| || | ||| || | |||||| || |||||| || || | | || | Sbjct 789 ACA-GGTAATGCATCGCAAATGAACTCTCGCTCAATTGATACTGCATTGCATATAATTTC 847 Query 122607 GTGGATA-GTT---TCGGTAGTGGGTCTATTACGCAAAG--TCTTG---AAGAGCTCCAC 122657 | | | | | |||| || || ||||| | ||| | || || || Sbjct 848 AAGCACACGATCCCTCGGCAGCTTGT---TTACGATATACTTCTCGTATAATAGG--CAA 902 Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 | |||| || ||| ||||||||||| || ||||| || || || |||| || || Sbjct 903 G-CAAAGTCAGTGTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGCCC 961 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | || |||||||| |||||| |||| |||||||| || || ||||| || || Sbjct 962 GGGCATCAAGCCACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAATAT 1021 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCG-TTCGGCGAAGGAGCGAGACTTTGCATCAA 122836 || || ||| ||||||||| | || || | || | | || ||| ||| ||| Sbjct 1022 GCCTTCGACAGCCGCAAACGCGACGAGCCGCGTAGGGAACGAAGTCTGAC--TGC--CAA 1077 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 122876 ||||| || |||||||| ||||| ||||||||||| || Sbjct 1078 TCCATTCAATCGCCCATTTGGCCTTTTTCTCAATACACGG 1117 >seq1609 Length=16429 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 8178 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 8119 Query 145344 GGTAGGA 145350 ||||||| Sbjct 8118 GGTAGGA 8112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016095089600