Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1878 143 3e-29 seq763 107 2e-18 seq1392 87.8 2e-12 >seq1878 Length=84023 Score = 143 bits (158), Expect = 3e-29 Identities = 367/553 (66%), Gaps = 12/553 (2%) Strand=Plus/Plus Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 |||| | | ||||| ||||||||| || | |||| || || || ||| | ||| || Sbjct 21049 CTCCTCATCCCACAGATCAAACTGCAGTTTCCCTTCCGAAGCAGGGCTTCCTTTAAACGT 21108 Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 118453 ||||| || || || || |||||||| | || || || | ||||| || || Sbjct 21109 TTCATAGGGCCCGTCCTTTTCAGCCAATTCCGTACTTGCTTCCACAGCTGCAAAGTAAAT 21168 Query 118454 TGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA 118513 || || || || | ||||| ||| |||||| | | || | || || | Sbjct 21169 GGTCTCGAAGATTTGTCTATTCAACTTCTTTGCCTCGGGGTGTGCGAATGGCAG--GGAA 21226 Query 118514 CAAAAT--AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571 | | ||| ||||||| || || |||||||||| || | |||||||| |||| | Sbjct 21227 AGCAGTGCAAACGCATCCGCCAGTCCCTGGACACCGATACCCACAGGGCGATGCCTCAAA 21286 Query 118572 TTAGACTTCCGAGCGGTCTC-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630 ||| | || || || | ||| ||||| || | ||| || |||| || ||||| Sbjct 21287 TTACTGTATCGGGCC-TCACACACTGGATAGTGGTTGCGATCAATCACCCGGTTAAGATT 21345 Query 118631 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 118690 | |||| ||||||||||| | || | | |||| ||||| |||| | || Sbjct 21346 TCTGGTCACAACCTTTGTCACCTCCTTCAATGCAACGTAGTCAAA--TGCGC----CATC 21399 Query 118691 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 118750 || ||| | |||||||| || || || || || || || | ||| ||| | Sbjct 21400 CTTCACAAAACGCGGAAGGGCAATAGAGGCTAGGTTGCATACGGCCACCTCGTCCCTCGA 21459 Query 118751 AGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 118810 ||||||||| | ||||||||||||||| ||||| | ||||| ||||| | || || || Sbjct 21460 AGTGTACTCGACAATTTCCGTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTTCTG 21519 Query 118811 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870 ||| ||||| ||||| ||||||||||||||||| | || |||||| ||| || Sbjct 21520 ATTAGACTTGAAATTACATGCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTCCACCTG 21579 Query 118871 GGACTTGAGAATA 118883 |||| || ||| Sbjct 21580 AGACTCAAGGATA 21592 >seq763 Length=1889 Score = 107 bits (118), Expect = 2e-18 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| |||||||| ||||| || || || || || |||| || || Sbjct 903 GCAAAGTCAGTGTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGCCCG 962 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | || |||||||| ||||| ||||| || || || ||||||||||| || || Sbjct 963 GGCATCAAGCCACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAATATG 1022 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 || || ||| ||| ||||| | ||| ||| || || || | || | ||| | Sbjct 1023 CCTTCGACAGCCGCAAACGCGACGAGCCGCGTAGGGAACGA---AGTCTGACTGCCAATC 1079 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGG 130233 || | |||||||| | ||||||||||| |||||||| Sbjct 1080 CATTCAATCGCCCATTTGGCCTTTTTCTCAATACACGG 1117 >seq1392 Length=6698 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 179758 TGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATA 179817 || |||||||||| ||||||||||||||||||||| ||||||| |||| ||| | |||| Sbjct 434 TGAATCATATTGATGATGAGACCCTTAATGTGTGACCCATCGTGATCCTGATCAGACATA 493 Query 179818 ATCATAAGCCGACCATAGCGAAG 179840 ||||| || | ||||| || || Sbjct 494 ATCATCAGGTGCCCATACCGCAG 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618419538128560