Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1459 241 4e-58 seq809 187 8e-42 seq1691 152 2e-31 seq1660 96.9 1e-14 >seq1459 Length=76451 Score = 241 bits (266), Expect = 4e-58 Identities = 474/695 (68%), Gaps = 12/695 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || || ||| | || || ||||| || || || | ||| | ||||||||| Sbjct 50115 GCGATCGGCATTGATCTTGGCACAACTTACTCGTGCGTGGGTGTGTTCAAAAATGATCAG 50056 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| | || || ||||| |||||| | ||||| || || || || | || | Sbjct 50055 GTTGAAATTGTCGCCAACGATCAGGGTAACCGCACAACACCTTCTTATGTGTCCTTCAGT 49996 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 ||||||||||| || |||| ||| | ||||| ||||||| || || |||| |||| Sbjct 49995 GAAACTGAGCGACTGGTTGGCGATGCCGCAAAGAATCAAGTGGCCATGAACCCAACAAAT 49936 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAAT 349436 ||||| |||||||| |||||| | ||||| ||| | | ||| || | || ||| Sbjct 49935 ACGGTGTTTGATGCCAAGCGAATAATTGGCCGAAAATATGATGACCCAGACCT--GCAAG 49878 Query 349437 CTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTG 349496 |||| | ||||||| || |||| || | || || || ||||| || | | Sbjct 49877 CTGACATGAAACATTGGCCCTTTAAGGTAACTGTGAAGGAAGG---GAAACCGGTTGTGG 49821 Query 349497 AGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||| || || ||||||| | | ||| ||||| |||||||| || | ||||| Sbjct 49820 AGGTAGAGTACCAAGGTGAGAGGAGAAC-CTTTTTCCCCGAAGAGATAAGTGCGATGGTC 49762 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 || |||||||||||||| || ||| | || | || || | ||| | | || || Sbjct 49761 TTGCAGAAAATGAAGGAAATCGCGGAATCCTACCTTGGCGAGAAGGTATCAAAGGCCGTC 49702 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | ||||| || || ||||| || || | || ||| ||||||||||| || || Sbjct 49701 GTGACTGTGCCTGCGTATTTCAACGACTCGCAACGTCAAGCAACAAAAGACGCGGGATCA 49642 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 ||||| || | | || | | || |||| ||||| || || ||||| ||||| ||| Sbjct 49641 ATTGCTGGTCTTGAGGTGTTGCGCATCGTTAACGAACCAACAGCCGCAGCCATTGCGTAT 49582 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTA---TTCTTATTTTTGATTTAGGTGGT 349792 || | || | || ||| || || || | | || || |||||| | || ||| Sbjct 49581 GGCATGGACAGAAGTTCTGAAGGAGCAATGAAGACGGTGCTCATCTTTGATCTTGGAGGT 49522 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 || ||||||||||| | | |||| |||| | || | |||||||| | |||||| Sbjct 49521 GGCACTTTTGATGTGACGTTGCTAAACATTGACGGTGGCTTATTTGAAGTGAGGGCAACT 49462 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 |||||||| |||||||||||||| ||||| ||||| Sbjct 49461 GCTGGTGACACACATCTTGGTGGGGAAGACTTTGA 49427 >seq809 Length=19217 Score = 187 bits (206), Expect = 8e-42 Identities = 859/1348 (64%), Gaps = 30/1348 (2%) Strand=Plus/Plus Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257 ||| || || ||||| | ||||| || || || || |||| ||| ||||| || || || Sbjct 278 CGCCATTGGTATCGACCTCGGTACGACGTACTCGTGCGTTGGTGTGTGGCAGAACGAACG 337 Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317 ||| ||||| ||||||||||| || |||||| | || ||||| || |||||||| || || Sbjct 338 TGTGGAAATCATTGCAAATGACCAGGGTAACCGTACGACGCCGTCCTACGTTGCCTTCAC 397 Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377 || ||||||| |||| || ||| | || || || || | || || || | || Sbjct 398 GGACTCTGAGCGCCTGATCGGCGATGCGGCGAAGAACCAGGTGGCGATGAACCCTACGAA 457 Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCT---ACACA 349434 ||||| || || || || ||||| || || | | || || ||| ||| || Sbjct 458 CACGGTGTTCGACGCGAAACGACTGATCGGACGGAAGTTCTCCGAC---TCTGTCGTGCA 514 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 || || | || || | || || | || || | || | || || || ||| | || Sbjct 515 GTCCGACATGAAGCACTGGCCCTTCAAGGTCGTCACCAAGGGCGACGACAAGCCAGTGAT 574 Query 349495 TGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGG 349553 |||| | | ||||| || ||||| || || || || || || |||| Sbjct 575 CCAGGTACAGTTCCGCGGTGAGACGAAAAC-CTTCAATCCTGAGGAGATCAGTTCCATGG 633 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACA-GTAACTGATGCT 349612 | || | || |||||||| |||| || | ||| | || ||| || || || | ||| Sbjct 634 TACTATTGAAGATGAAGGAGGTTGCGGAGTCGTATCTTGG-GAAGCAGGTGGCTAAGGCT 692 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || | || || || || || || || || | ||||| ||||| || || || || Sbjct 693 GTCGTAACAGTGCCTGCATACTTCAACGACTCGCAGCGCCAGGCAACGAAGGACGCGGGG 752 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 | ||||| || | | || || | || || || || || || ||||| |||||||| Sbjct 753 ACGATTGCTGGTCTGGAGGTGCTGCGCATCATCAACGAGCCAACGGCTGCTGCAATTGCC 812 Query 349733 TATGGGCTTGATAA----AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGG 349788 ||||| || || || ||||| | | ||| || | || || || ||| | || Sbjct 813 TATGGCCTGGACAAGGCTGATGAG-GGGAAGGAACGCAACGTGCTCATCTTCGATCTTGG 871 Query 349789 TGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGC 349848 |||||| || || ||||| || | || || |||| | || || || || || ||||| Sbjct 872 TGGTGGCACCTTCGATGTGACATTGCTGACGATTGACGGCGGCATCTTCGAGGTGAAAGC 931 Query 349849 AACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTT 349908 || |||||| || || |||||||||||||| || || ||||| || || | || || Sbjct 932 CACAAATGGTGACACCCACCTTGGTGGAGAAGACTTCGACAATCGCCTTGTGGCTCACTT 991 Query 349909 TGTTAAAGAATTTAAGCGTCAAGCTAAA----ATTGATATTGGAGATAATCCTAGAGCAA 349964 | | ||||| ||||| |||| || | ||| | | || | || Sbjct 992 TACCGAGGAATTCAAGCG-CAAGAACAAGGGCAAGGATCTCTCATCGAACTTGCGCGCCC 1050 Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024 | || ||||| | || || ||||| || || ||||| | | || || || | || Sbjct 1051 TTCGCCGCCTTCGTACGGCTTGTGAGCGCGCCAAGCGCACACTTTCTTCCGCTGCGCAGG 1110 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCA----TCTATTACA 350080 | | || || || ||| | || || | | ||| ||| || || | ||||| Sbjct 1111 CAACCATCGAGATCGATGCACT--CT--TCGAAAACATTGACTTCCAGGCGACCATTACC 1166 Query 350081 CGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAA 350140 |||||||| || || ||| | || || || || | | ||| || | || || || Sbjct 1167 CGTGCTCGTTTCGAGGAACTGTGCGGTGACCTGTTCCGTGGTACATTGCAACCCGTAGAG 1226 Query 350141 AAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGT 350200 || | | ||||| || ||| |||| | | || || || | |||||| Sbjct 1227 CGTGTGCTGCAGGATGCCAAGATGGACAAACGCGCCGTGCACGATGTGGTCCTGGTTGGT 1286 Query 350201 GGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAA 350260 ||||| || ||||| || || || ||| | | ||||| ||||| |||||| || Sbjct 1287 GGTTCCACCCGTATCCCCAAGGTGATGCAGCTTGTGTCTGACTTTTTCGGTGGCAAGGAG 1346 Query 350261 CCT-TCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATC 350319 | | | ||| | || || || || || || || || || || |||||||| || || | Sbjct 1347 CTTAACAAGAGC-ATCAACCCCGACGAGGCAGTGGCCTACGGCGCTGCTGTACAAGCTTT 1405 Query 350320 TATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCC 350379 || || | || |||||| ||| || | ||| | || || ||||| | || Sbjct 1406 CATCTTGACCGGTGGTAAGAGCAAGCAAACGGAAGGTCTCCTCCTTCTGGATGTCGCCCC 1465 Query 350380 ACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAG 350439 ||| |||| || | || || | |||| || ||||| | || || | || | Sbjct 1466 GCTTACGCTCGGCATCGAGACGGCAGGTGGCGTGATGACGGCACTGATCAAGCGCAACAC 1525 Query 350440 TACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGT 350499 || | || || |||||| ||||| || || |||| |||| |||||||| | || Sbjct 1526 GACGATCCCCACCAAAAAGAGCCAAATCTTCTCCACATACTCAGACAATCAGCCCGGTGT 1585 Query 350500 AACAATTCAAGTATTTGAAGGTGAACGT 350527 ||||| || ||||| ||||| ||| Sbjct 1586 GCACATTCAGGTCTTTGAGGGTGAGCGT 1613 >seq1691 Length=35836 Score = 152 bits (168), Expect = 2e-31 Identities = 231/329 (70%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||||||||| ||| | || | || || | ||| | | |||||| | || Sbjct 27382 AAGATGAAGGAAATTGCAGAAACGTACCTTGGCGAGAAAGTGAAAAACGCTGTTGTAACG 27441 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 ||||| || || || ||||| || || || | ||||| |||||||| | ||| || Sbjct 27442 GTACCTGCGTACTTCAATGACGCACAACGGCAGTCGACAAAGGATGCTGGGACCATCGCC 27501 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || || || || | | || || ||||| ||||| || || || || ||||||||||| Sbjct 27502 GGTTTGAACGTAGTGCGCATCATCAATGAGCCCACCGCAGCCGCCATCGCATATGGGCTA 27561 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 | ||| | | || || ||||| || | || ||| | ||||||||||| ||| Sbjct 27562 AACAAA------GCCGGTGAGAAGAATATCCTGGTGTTCGATCTTGGTGGTGGTACCTTT 27615 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| ||||| || ||| | || ||||| | || |||||| || || |||||| Sbjct 27616 GATGTGTCACTGCTGACAATCGATGAGGGCTTCTTCGAAGTTGTGGCGACAAACGGTGAT 27675 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || |||||||| || || |||||||| Sbjct 27676 ACGCACCTTGGTGGTGAGGACTTTGATAA 27704 >seq1660 Length=18801 Score = 96.9 bits (106), Expect = 1e-14 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257 ||| || || ||||| | ||||| || || || || |||| ||| ||||| || || || Sbjct 8010 CGCCATTGGTATCGACCTCGGTACGACGTACTCGTGCGTTGGTGTGTGGCAGAACGAACG 7951 Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317 ||| ||||| ||||||||||| || |||||| | || ||||| || |||||||| || Sbjct 7950 TGTGGAAATCATTGCAAATGACCAGGGTAACCGTACGACGCCGTCCTACGTTGCTTTCGT 7891 Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCT 349363 | | | |||| | | |||| ||| | || || || || || ||| Sbjct 7890 CAATAATGAGGTTCTTGTTGGCGATGCGGCGAAGAACCACGCCGCT 7845 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257 ||| || || ||||| | ||||| || || || || |||| ||| ||||| || || || Sbjct 114 CGCCATTGGTATCGACCTCGGTACGACGTACTCGTGCGTTGGTGTGTGGCAGAACGAACG 55 Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGC 349311 ||| ||||| ||||||||||| || |||||| | || ||||| || |||||||| Sbjct 54 TGTGGAAATCATTGCAAATGACCAGGGTAACCGTACGACGCCGTCCTACGTTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515215066836878