Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1878 174 2e-38 seq763 152 6e-32 >seq1878 Length=84023 Score = 174 bits (192), Expect = 2e-38 Identities = 672/1032 (65%), Gaps = 28/1032 (3%) Strand=Plus/Plus Query 78872 CATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGG 78931 |||| ||||| |||||||| |||||| | | || || || | || || || | ||||| Sbjct 21240 CATCCGCCAGTCCCTGGACACCGATACCCACAGGGCGATGCCTCAAATTACTGTATCGGG 21299 Query 78932 CCGC-CTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC 78990 || | | | | || || ||| ||||| || || ||||| || || | || || ||| Sbjct 21300 CCTCACACACT-GGATAGTGGTTGCGATCAATCACCCGGTTAAGATTTCTGGTCACAACC 21358 Query 78991 CGAGTCACCTCGTACAATTTGGCGAAATCAAAAT-GATTTCCTTTGATGAAAGTCGGTAG 79049 |||||||| | |||| || | ||||| | ||||| | ||| ||| || Sbjct 21359 TTTGTCACCTCCTTCAATGCAACGTAGTCAAATGCGCCATCCTTC-ACAAAACGCGGAAG 21417 Query 79050 GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAAC---CTCGATGAT 79106 | | || || |||||||| |||||| ||||||| || ||| ||||| || Sbjct 21418 GGCAATAGAGGCTAGGTTGCATACGGCCACCTCGTCC---CTCGAAGTGTACTCGACAAT 21474 Query 79107 TTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTT 79166 ||| ||||||||||| || | || || ||||||| || ||||| || ||| || Sbjct 21475 TTCCGTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTTCTGATTAGACTTGAAATT 21534 Query 79167 ACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCC 79226 ||| || |||||||| ||| | || ||| || || |||||| || || | Sbjct 21535 ACATGCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTCCACCTGAGACTCAAGGATAAG 21594 Query 79227 GTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACC--GACCCTGTGCGACGTACGTC 79284 | ||| | ||| ||||| | | | ||||| || |||| | | || | Sbjct 21595 GAACCACAGTTCCTGGGCCTGAATAG--TTCTTACGCCACGACCTTCCCTTTCATATCGC 21652 Query 79285 CGGTACAACTCGTTGAAAGCCTCCCCATAGACA-TCGGGCAGGCCCGGGCACTCGTGCGG 79343 || || || | || | | ||||| ||| || || ||| | || || Sbjct 21653 TCATATAAATCAGTAAACTCTTGGCCATA-ACAGTCACTCAAAAAGGGGGCCGTGTTGGG 21711 Query 79344 GCACATCAG-GTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCC 79402 | ||| || || | ||||| | | ||||||| ||||| || ||||| || |||| Sbjct 21712 GTCCATAAGCGTCCAAGTCC-CATGACTCTCAACTCGTTCCATAAACAGGTCAGGAATCC 21770 Query 79403 ACAGGGCCGTGAAG-AGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGC 79461 |||| |||| || | ||| || |||| ||||| | |||| || ||| Sbjct 21771 ACAGA-CCGTAAAACAAGTCCCGCGCACGCTGATCCTCCTTGCCCGTATTTTTCTTCAGA 21829 Query 79462 TCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTG 79521 ||| || | | ||| || |||||||| ||||||| ||| || || || | |||||| Sbjct 21830 AGGAGGAAACCAAAGATATCCGCGTGCCAGGGCTCCAAATAAATAGCAAAGGCGCCCTTG 21889 Query 79522 CGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGC 79581 |||||||| |||||||||| || || || || ||||| || | || || |||||||| Sbjct 21890 CGCTTGCCACCGCCCTGGTCAACATAGCGAGCAGTGTTATTCCACACACGAAGCATGGGG 21949 Query 79582 ACGATGCCGTCGGCGACG--CCGTTCGTCCCGTTGAT-TCGTGTACCGCTCGCCCGAATG 79638 || | || | ||||| || || |||||| ||| | | ||||| || |||||| Sbjct 21950 ACCAGACCAT--TCGACGTACCATTTGTCCCGGCGATGTAGCTCCCCGCT-GCGCGAATG 22006 Query 79639 TTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAG 79697 || | ||| |||||| ||||| || || | | ||| |||| ||| |||| ||||| Sbjct 22007 TT-GTGCATGTGGATCCCGATCCCACCAGCTGATTTGCTGATGATCGCACACTGTTTGAG 22065 Query 79698 CGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACAT 79757 || ||||||||||| || || ||| || |||||| || || ||||| ||| Sbjct 22066 TGTGTCGTAGATGCCATCAATACTGTCTTCACGCATAGCTACAAGAAAGCATGAACTCAT 22125 Query 79758 CTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTG 79817 |||||| || || || ||||| | || || || ||||| || || ||| ||| Sbjct 22126 TTGTGGGAATGGGGTCCCCGCATTGAATAACGTTGGAGTAGCGTGGGTAAAAAACCCTTG 22185 Query 79818 GCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGC 79877 ||| || || |||||||| || || | ||| || || ||||| |||| || Sbjct 22186 CGACATGTAGTCATATGTCTCCTTCACACGTTCCAAGTCCTCTCCATGGATACCGAGGGC 22245 Query 79878 GACGCGCATGAA 79889 || |||| ||| Sbjct 22246 AACACGCAGGAA 22257 >seq763 Length=1889 Score = 152 bits (168), Expect = 6e-32 Identities = 349/512 (68%), Gaps = 20/512 (4%) Strand=Plus/Minus Query 59617 TCTGGTCCGTCGAGGAGATTGACCTCGCCGGA--GACCTGAAGGATTGGGACAAGCTCAA 59674 ||||| | || ||||| || ||||| | ||| ||| ||| |||||||| ||||| | Sbjct 1416 TCTGGACGGTGGAGGAAATCGACCTTG--GGAATGACATGACAGATTGGGAGAAGCTGGA 1359 Query 59675 TTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAAT 59734 ||| ||||| || |||||||| || |||| ||||||||||| || ||||| || Sbjct 1358 CGACGGCGAGCGACACTTCATCAAACATGTGTTGGCTTTCTTCGCGGCAAGCGATGGCAT 1299 Query 59735 TGTGATGGAAAATATAGACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAGGCCCG 59791 |||| |||| || | | |||| ||| | | || || ||| | | || | || Sbjct 1298 TGTGCTGGAGAACCTTGCG--GAACGGTTC-ATGTGCGAAGTGCAGGTACCTGAAGTTCG 1242 Query 59792 GTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCA 59850 | ||||| | || ||| | | | | || |||||| || ||||| ||||| | Sbjct 1241 ATGTTTCTATGGGTTCCAGATTGCT-ATGGAAAATATCCATTCTGAGACATACTCCGTGT 1183 Query 59851 TGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA 59910 ||||||||| || || |||||| || || ||| | ||| | | ||||||| || Sbjct 1182 TGATCGATACGTATGTTGTGGATCCCGACGAAAAGCAACGACTGCTACATGCCATAAGGA 1123 Query 59911 CG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATG---AGTCCTGGA 59966 || | || | | | | | |||| || ||||||| || | ||||| |||| || Sbjct 1122 CGATTCCGTGTATTGAGA-AAAAGGCCAAATGGGCGATTGAATGGATTGGCAGTCA--GA 1066 Query 59967 GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGC 60026 | || || | || ||| | || ||||| || ||||| || || ||||||||| Sbjct 1065 -CTTCGTTCCCTACGCGGCTCGTCGCGTTTGCGGCTGTCGAAGGCATATTTTTCTCTGGC 1007 Query 60027 TCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCC 60086 |||||||| || ||||| ||| | || ||||||||| | ||||| || || | ||| | Sbjct 1006 TCGTTCTGCGCCATTTTTTGGTTAAAGAAGCGTGGCTTGATGCCCGGGCTCACCTTCAGC 947 Query 60087 AACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||||||| || || ||||| || || Sbjct 946 AACGAGCTGATTTCACGTGATGAGGGTCTGCA 915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548510908609440