Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1878 131 2e-25 seq790 123 3e-23 seq763 102 9e-17 >seq1878 Length=84023 Score = 131 bits (144), Expect = 2e-25 Identities = 344/515 (67%), Gaps = 10/515 (2%) Strand=Plus/Minus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTAC 53251 ||| |||| || ||| | |||||||| || || |||| ||||| ||||| || Sbjct 22257 TTCCTGCGTGTTGCCCTCGGTATCCATGGAGAGGACTTGGAACGTGTGAAGGAGACATAT 22198 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 |||| ||| ||| || ||||| ||||| || ||||| | ||||| || || || Sbjct 22197 GACTACATGTCGCAAGGGTTTTTTACCCACGCTACTCCAACGTTATTCAATGCGGGGACC 22138 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||| || ||| ||||| || || || ||| || ||| || || ||| Sbjct 22137 CCATTCCCACAAATGAGTTCATGCTTTCTTGTAGCTATGCGTGAAGACAGTATTGATGGC 22078 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || ||||| ||||||| |||| ||| | | ||||| ||||| ||| Sbjct 22077 ATCTACGACACACTCAAACAGTGTGCGATCATCAGCAAATCAGCTGGTGGGATCGGGATC 22018 Query 53432 CAC-TGCTCGAACGTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGG--CGTCGC 53487 ||| ||| | ||| | || || | ||| | | ||| ||||| || || ||||| Sbjct 22017 CACATGCAC-AACATTCGCGC-AGCGGGGAGCTACATCGCCGGGACAAATGGTACGTCGA 21960 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 |||| | || || ||||| || || | || ||||| || || || || ||||||| Sbjct 21959 --ATGGTCTGGTCCCCATGCTTCGTGTGTGGAATAACACTGCTCGCTATGTTGACCAGGG 21902 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||||| ||||||||||| | || || || || | ||||| |||||||| || || | Sbjct 21901 CGGTGGCAAGCGCAAGGGCGCCTTTGCTATTTATTTGGAGCCCTGGCACGCGGATATCTT 21842 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666 | || ||| ||| ||| ||| | || || ||| ||| || ||| ||| Sbjct 21841 TGGTTTCCTCCTTCTGAAGAAAAATACGGGCAAGGAGGATCAGCG-TGCGCGGGACTTGT 21783 Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAA 53701 || | |||||||||||| ||||| || ||| || Sbjct 21782 TTTACGGTCTGTGGATTCCTGACCTGTTTATGGAA 21748 >seq790 Length=43444 Score = 123 bits (136), Expect = 3e-23 Identities = 273/404 (68%), Gaps = 13/404 (3%) Strand=Plus/Plus Query 158956 CTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGG---ACCGGGCTGTTGGAGCATG 159012 |||||| || ||||| || | ||| | || ||||| | | | |||| ||| || Sbjct 27947 CTGTGCTGCTTGCCAGTAGCTAACACCCAATCATCTGGCTTATCTGCCTGTAGGA---TG 28003 Query 159013 AGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTT- 159071 ||||||||| | | ||||| || | || ||||||||||| ||| |||| | || Sbjct 28004 AGCCACATGCCATGTACGTAGTCTTTTGCATGACCCCAGTCCCGCACCGCATTTACATTA 28063 Query 159072 CCCGAGCTCGATGACTTTTCCAGAC---TTTTTCCACTCAGC-CAGACCGAGCGTGATCT 159127 ||| | | | ||||| || || | || | || | ||| |||| || || | Sbjct 28064 CCCAAAAACAACTCCTTTTGCATACCCCTCGTTATGCGCACCGCAGCCCGAACG--ATTT 28121 Query 159128 TGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTAC 159187 | || |||||| || | || || ||| ||||||||||| ||||| || ||| || Sbjct 28122 TCTTTGTGACAAACGCTTCGCCTCGACGTGGGGACTCATGGTTGAACAGTATTCCGTTAG 28181 Query 159188 AAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGG 159247 | || |||| | ||| ||||| || || ||| ||| ||||| | | | | || |||| Sbjct 28182 AGGCAAACATATCATACGACTCACGATAGTTTACAGTAATCCAATGTGAATACAGTTTGG 28241 Query 159248 AGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAATTGGTTCCTGAA 159307 || |||| || ||||| ||||||||||| |||| ||| | || | || || | Sbjct 28242 CCACAGCGTACGGGCTCCGTGGATAAAATGGGGTCCTCTCCGTCTGCGGGGCCTCTTGGA 28301 Query 159308 CCTTTCCAAACATTTCACTCGTCCCAGCCTGATAAAATTTGAAT 159351 | || ||| ||| |||||| | | |||||||||||||||| || Sbjct 28302 CATTCCCATACAATTCACTACTACTAGCCTGATAAAATTTGCAT 28345 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 124710 GACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTT 124769 ||||| ||||||||||| || || || | |||||||| | |||||||| || |||||| Sbjct 28154 GACTCATGGTTGAACAGTATTCCGTTAGAGGCAAACATATCATACGACTCACGATAGTTT 28213 Query 124770 TTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGG 124829 || ||||||| | | || |||| ||| | || ||||| || || || |||||| Sbjct 28214 ACAGTAATCCAATGTGAATACAGTTTGGCCACAGCGTACGGGCTCCGTGGATAAAATGGG 28273 Query 124830 GTGTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGA 124889 || | || | || | | | || | |||||| ||| || | ||| |||||| Sbjct 28274 GTCCTCTCCGTCTGCGGGGCCTCTTGGACATTCCCATACAATTCACTACTACTAGCCTGA 28333 Query 124890 TAGAATTTGAATTTT 124904 || |||||| || || Sbjct 28334 TAAAATTTGCATGTT 28348 >seq763 Length=1889 Score = 102 bits (112), Expect = 9e-17 Identities = 345/527 (65%), Gaps = 24/527 (5%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| | ||||||||||| |||||||| ||||| ||||| || ||| ||| Sbjct 957 AGCCCGGGCATCAAGCCACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCAGAGAAA 1016 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAG--GCGTTGCG--CGAACGGTGCATCGGA 74920 || |||||||||||| |||||| ||||| || |||| | | |||| || | | Sbjct 1017 AATATGCCTTCGACAGCCGCAAACGCGACGAGCCGCGTAGGGAACGAAGTCTGACTGCCA 1076 Query 74921 AGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCG----- 74975 | ||| ||| || ||||||| || ||| | | | || ||| |||| Sbjct 1077 ATCCATTCAA-TC---GCCCATTTGGCCTTT-TTCTCAATACACGGA----ATCGTCCTT 1127 Query 74976 ATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGT 75035 || || || | || | | ||| || ||||||||| || | | || |||| | Sbjct 1128 ATGGCATGTAGCAGTCGTTGCTTTTCGTCGGGATCCACAACATACGTATCGATCAACACG 1187 Query 75036 GAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGC 75094 ||||| ||||| ||||| || || | | | | |||| || | |||||| | || | Sbjct 1188 GAGTATGTCTCAGAATGGATATTTTCCAT-AGCAATCTGGAACCCATAGAAACATCGAAC 1246 Query 75095 CTCTGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCG 75152 || | | ||| || | | |||| ||| | | ||||||| || ||||| Sbjct 1247 TTCAGGTACCTGCACTTCGCACATGAACCGTTC--CGCAAGGTTCTCCAGCACAATGCCA 1304 Query 75153 TCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT 75212 || || ||||| ||||||| || |||||| ||||| ||||| |||| || Sbjct 1305 TCGCTTGCCGCGAAGAAAGCCAACACATGTTTGATGAAGTGTCGCTCGCCGTCGTCCAGC 1364 Query 75213 TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCA 75272 || |||||||| ||| ||| | | | || || ||||| |||||||||| || | Sbjct 1365 TTCTCCCAATCTGTCATGTCATTCCCAAGGTCGATTTCCTCCACCGTCCAGATGCTGCTC 1424 Query 75273 ATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 ||||| |||||| ||| | ||||||||| ||||| || || Sbjct 1425 TCCGCCTCCTTGTACTTCTGCCATATGTCAGGGTACTTGATAGGGAA 1471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202141754800