Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1149 152 6e-32 seq763 116 4e-21 seq790 107 2e-18 seq1878 104 3e-17 >seq1149 Length=36903 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || ||||| || ||| |||||||||||||| | | Sbjct 9828 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAAACCATTGCTCTTGAGGTTGAGGCCAGC 9769 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || ||||||||||||||||| || ||||| || ||| Sbjct 9768 GACACCATTGAGAACGTAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCGGATCAG 9709 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | |||||||| || ||||| | ||||| | ||| || || || ||||| || Sbjct 9708 CAGCGGTTGATTTTTGCCGGGAAGCAGTTGGAGGAGGGTCGCACGCTTGCGGACTACAAC 9649 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || || || | || ||||| ||||| Sbjct 9648 ATTCAGAAGGAGTCGACACTGCACCTGGTACTCCGCCTTCGAGGTGG 9602 >seq763 Length=1889 Score = 116 bits (128), Expect = 4e-21 Identities = 374/573 (65%), Gaps = 8/573 (1%) Strand=Plus/Minus Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCC-ATCGCAAGTTTCTG 64355 ||||| || | ||||||||| | ||| || |||||| | || | ||| | |||| Sbjct 1471 TTCCCTATCAAGTACCCTGACATATGGCAGAAGTACAAGGAGGCGGAGAGCA-GCATCTG 1413 Query 64356 GACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACA 64415 |||||| ||||| | || || | || || | | || ||||| || || || || Sbjct 1412 GACGGTGGAGGAAATCGACCTTGGGAATGACATGACAGATTGGGAGAAGCTGGACG-ACG 1354 Query 64416 G-GAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGT 64474 | || | ||||||||||| || | || |||||||| |||| || || |||||| Sbjct 1353 GCGAGCGACACTTCATCAAACATGTGTTGGCTTTCTTCGCGGCAAGCGATGGCATTGTGC 1294 Query 64475 TTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCT 64534 | ||||| | | | || | || || ||| | || || | || | |||| Sbjct 1293 TGGAGAACCTTGCGGAACGGTTCATGTGCGAAGTGCAGGTACCTGAAGTTCGATGTTTCT 1234 Query 64535 ATGCGTATCAGGGATT--TAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTGA 64592 ||| || ||| ||| || |||| ||| ||| ||||| || || | |||| || Sbjct 1233 ATGGGTTCCAG--ATTGCTATGGAAAATATCCATTCTGAGACATACTCCGTGTTGATCGA 1176 Query 64593 CAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTACC 64652 | || |||| |||||| | ||| ||| | ||||| | || ||| ||| | || Sbjct 1175 TACGTATGTTGTGGATCCCGACGAAAAGCAACGACTGCTACATGCCATAAGGACGATTCC 1116 Query 64653 CGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATCGTGGGTCGTCGTTTGG 64712 | || |||||||| ||||||| || ||||| || | | ||||| Sbjct 1115 GTGTATTGAGAAAAAGGCCAAATGGGCGATTGAATGGATTGGCAGTCAGACTTCGTTCCC 1056 Query 64713 TCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTC 64772 | ||| |||| || ||||| ||| ||||| || || || ||||| || ||||| | Sbjct 1055 TACGCGGCTCGTCGCGTTTGCGGCTGTCGAAGGCATATTTTTCTCTGGCTCGTTCTGCGC 996 Query 64773 TATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832 ||||| ||| |||| ||||| ||| ||||||| || || | || ||||||||||| Sbjct 995 CATTTTTTGGTTAAAGAAGCGTGGCTTGATGCCCGGGCTCACCTTCAGCAACGAGCTGAT 936 Query 64833 CTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 || || || ||||| || ||| || ||||| Sbjct 935 TTCACGTGATGAGGGTCTGCACACTGACTTTGC 903 >seq790 Length=43444 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 24716 ATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAGGAGACGCCACA 24775 || || |||||||||||| ||| ||||| ||| ||| || || || ||| | || || Sbjct 28345 ATGCAAATTTTATCAGGCTAGTAGTAGTGAATTGTATGGGAATGTCCAAGAGGCCCCGCA 28286 Query 24776 GTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTA 24835 | |||||| || ||||||||||| || |||||||| | || | || ||| | | Sbjct 28285 GACGGAGAGGACCCCATTTTATCCACGGAGCCCGTACGCTGTGGCCAAACTGTATTCACA 28226 Query 24836 CTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTT 24895 ||||| || ||||| |||||| | ||| || | ||| | |||||||| ||||| Sbjct 28225 TTGGATTACTGTAAACTATCGTGAGTCGTATGATATGTTTGCCTCTAACGGAATACTGTT 28166 Query 24896 CAACCATGAGTC 24907 |||||||||||| Sbjct 28165 CAACCATGAGTC 28154 >seq1878 Length=84023 Score = 104 bits (114), Expect = 3e-17 Identities = 141/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 80882 CCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCAT 80941 |||||||||| ||||||| | || || || ||||| ||||||||||| || | | Sbjct 21399 CCTTCACAAAACGCGGAAGGGCAATAGAGGCTAGGTTGCATACGGCCACCTCGTC--CCT 21456 Query 80942 CT--GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTT 80999 | || ||||||| ||||||||||||||||| || | ||||| || || || ||||| Sbjct 21457 CGAAGTGTACTCGACAATTTCCGTGCACAAATTTGAGCATTTAATCGTGCCGAGATTTTT 21516 Query 81000 CTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGAC 81059 ||| || |||||| || || || |||||||| ||| | || || || || || Sbjct 21517 CTGATTAGACTTGAAATTACATGCATCCTTGTAAAGCATAAAAGGAACCCCCGTTTCCAC 21576 Query 81060 CTGTGACTTGAGGAT 81074 ||| |||| ||||| Sbjct 21577 CTGAGACTCAAGGAT 21591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570295956889120