Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1149 82.4 5e-11 >seq1149 Length=36903 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | |||| || || || |||||| |||||||| || || | | Sbjct 9602 CCACCTCGAAGGCGGAGTACCAGGTGCAGTGTCGACTCCTTCTGAATGTTGTAGTCCGCA 9661 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | || || |||||||| || || ||||| || ||||| || Sbjct 9662 AGCGTGCGACCCTCCTCCAACTGCTTCCCGGCAAAAATCAACCGCTGCTGATCCGGAGGG 9721 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | || ||| | ||| ||||| | ||| || Sbjct 9722 ATACCCTCCTTGTC-CTGAATCTTGGCCTTTACGTTCTCAATGGTGTCGCTGGCCTCAAC 9780 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | | || ||||| || || | |||||||| || ||||||||| || Sbjct 9781 CTCAAGAGCAATGGTTTTGCCAGTGAGGGTTTTCACGAAGATCTGCATGGTG 9832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721828736058