Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1149 111 1e-19 >seq1149 Length=36903 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || ||||| || || ||||| | ||| ||||||| || || | Sbjct 9830 CCATGCAGATCTTCGTGAAAACCCTCACTGGCAAAACCATTGCTCTTGAGGTTGAGGCCA 9771 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| | ||||||| || || || ||||| ||||| || || || || || |||| Sbjct 9770 GCGACACCATTGAGAACGTAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCGGATC 9711 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| || || | ||||| || || ||||| || || || || | || |||| Sbjct 9710 AGCAGCGGTTGATTTTTGCCGGGAAGCAGTTGGAGGAGGGTCGCACGCTTGCGGACTACA 9651 Query 27166 ACATTCAAAAGGAGTCGAC 27184 ||||||| ||||||||||| Sbjct 9650 ACATTCAGAAGGAGTCGAC 9632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907385691520