Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq67 82.4 7e-11 >seq67 Length=60658 Score = 82.4 bits (90), Expect = 7e-11 Identities = 178/264 (67%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 ||||||||||| || ||||||| | ||||||||||| |||||||| || || Sbjct 40872 ATGGCGCTCCCACCATGCCACATGATGGCGCAATTCTACGTGAGCAATGGGGAACTCTCA 40931 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 ||| | | || || || || | || ||||| | || || || ||||| |||||| Sbjct 40932 TGCATGTTGTACCAGCGGTCATGTGATATGGGTCTTGGCGTCCCCTTCAATATTGCTTCG 40991 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATG-TCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 || || ||||| || | | | || || | | | ||| || | || || || |||| Sbjct 40992 TATGCACTGCTTACATTCCTCATGGCAAAAGCTTCTGGACTTCG-GCCGGGCGAATTGGT 41050 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCT 34815 ||| || | || ||||| ||| | ||| ||||| | |||| | |||| || | Sbjct 41051 GCACACCCTTGGCGATGCACATGTTTACAGTAACCATGTGGAGCCGTGTCGGAAGCAATT 41110 Query 34816 GCAACGAGAGCCCCGACCGTTCCC 34839 | |||| | |||||| |||||||| Sbjct 41111 GAAACGCGTGCCCCGCCCGTTCCC 41134 Score = 82.4 bits (90), Expect = 7e-11 Identities = 178/264 (67%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 |||||||| |||||| | |||| || || |||| | |||| | ||||| ||| Sbjct 41134 GGGAACGGGCGGGGCACGCGTTTCAATTGCTTCCGACACGGCTCCACATGGTTACTGTAA 41075 Query 6566 ATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGA-CATGAGC 6624 | ||| ||||| || | || ||||||| || || || | || ||| | | | || Sbjct 41074 ACATGTGCATCGCCAAGGGTGTGCACCAATTCGCCCGGC-CGAAGTCCAGAAGCTTTTGC 41016 Query 6625 GATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTC 6684 || | | | || ||||| || || |||||| ||||| || || || | ||||| || Sbjct 41015 CATGAGGAATGTAAGCAGTGCATACGAAGCAATATTGAAGGGGACGCCAAGACCCATATC 40956 Query 6685 TCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAG 6744 | || || || || | | ||| || || |||||||| ||||||||||| | Sbjct 40955 ACATGACCGCTGGTACAACATGCATGAGAGTTCCCCATTGCTCACGTAGAATTGCGCCAT 40896 Query 6745 GGTGTGGCACGGGGGGAGCGCCAT 6768 ||||||| || ||||||||||| Sbjct 40895 CATGTGGCATGGTGGGAGCGCCAT 40872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251047754720