Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1149 109 4e-19 >seq1149 Length=36903 Score = 109 bits (120), Expect = 4e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || ||||| || |||| || ||||| ||| Sbjct 9828 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAAACCATTGCTCTTGAGGTTGAGGCCAGC 9769 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| || ||| ||||| || ||| | || || ||||| Sbjct 9768 GACACCATTGAGAACGTAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCGGATCAG 9709 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || |||||||| || || |||| || | ||||| | | || |||||| Sbjct 9708 CAGCGGTTGATTTTTGCCGGGAAGCAGTTGGAGGAGGGTCGCACGCTTGCGGACTACAAC 9649 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||| ||| Sbjct 9648 ATTCAGAAGGAGTCGACA 9631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001253909208