Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq763 136 3e-27 >seq763 Length=1889 Score = 136 bits (150), Expect = 3e-27 Identities = 468/718 (65%), Gaps = 20/718 (3%) Strand=Plus/Plus Query 4277 CTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATT 4336 ||| ||||| || |||||||| || | | ||||| | ||||| || ||||| || || Sbjct 626 CTTCTCGAAAAAGTTAGTTTTCCCCTGAAGAGAAATCATATCCATGAAGTCAAATGGGTT 685 Query 4337 AGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTC 4396 | | ||||||||| || || | | || || | || || || ||||| || Sbjct 686 CTTCGAGTTGTAATGACGGTCGTACCCCAAGGACACCAGGAGCCGATCGGCGACAAACTC 745 Query 4397 TATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGT 4456 || ||||| |||| || | | || ||||||||||| | ||||||| || || Sbjct 746 AATGTACTGAGTCATCAGCTGAGAATTCATTCCAATTAAGCGGACAGGTAATGC--ATCG 803 Query 4457 CAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTA 4514 |||| |||||| | || || | ||| || | || || || | ||| | Sbjct 804 CAAATGAACTCTCGCTCAATTGATACTGCATTGCATATAATTTCAAGCACACGATCCCTC 863 Query 4515 GATGGTTTATTTACTAAGTA--TC-CAAACAATAAACACGCAAAATCACAATGCAAACCT 4571 | | || ||||| | || || | | |||| || ||||| ||| |||| ||| Sbjct 864 GGCAGCTTGTTTACGATATACTTCTCGTATAATAGGCAAGCAAAGTCAGTGTGCAGACCC 923 Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || || | |||||| ||||| || || | |||||||| || || | ||| || Sbjct 924 TCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGCCCGGGCATCAAGCCACGCTTCTTT 983 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 | |||||| || ||| || || ||||| || ||||||||||| || || |||||||| Sbjct 984 AACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAATATGCCTTCGACAGCCGCAAACGCG 1043 Query 4692 ACTAATCGGGACCCGAACGA--GCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 || | || | |||||| ||| | || | |||||||| | ||||| || | Sbjct 1044 ACGAGCCGCGTAGGGAACGAAGTCTGAC--TGCC---AATCCATTCAATCGCCCATTTGG 1098 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT--TTACTTTTTTCAAA 4807 | ||||||| || |||||||| || ||| || | | | | || | ||||| Sbjct 1099 CCTTTTTCTCAATACACGGAATCGTCCTTATGGCATGTAGCAGTCGTTGC--TTTTCGTC 1156 Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 || || || ||| || || || | | | || | |||||||| |||||||| || Sbjct 1157 GGGATCCACAACATACGTATCGATCAACACGGAGTATGTCTCAGAATGGATATTTTCCAT 1216 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA-AAATC 4926 ||||||||| || || || || |||| | |||| | ||| || |||||| ||| || | Sbjct 1217 AGCAATCTGGAACCCATAGAAACATCGAACTTCAGGTACCTGCACTTCG-CACATGAACC 1275 Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 ||| | | ||| || || || || || || || || || || ||||| ||||| Sbjct 1276 GTTCCGCAAGGTTCTCCAGCACAATGCCATCGCTTGCCGCGAAGAAAGCCAACACATG 1333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039055344658