Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq763 129 8e-25 >seq763 Length=1889 Score = 129 bits (142), Expect = 8e-25 Identities = 392/591 (66%), Gaps = 26/591 (4%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| ||| || || || ||||| | ||| | ||||| || |||||| Sbjct 900 CAAGCAAAGTCAGTGTGCAGACCCTCATCACGTGAAATCAGCTCGTTGCTGAAGGTGAGC 959 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| | |||||||| || | |||||| || || ||| || ||||| || ||| Sbjct 960 CCGGGCATCAAGCCACGCTTCTTTAACCAAAAAATGGCGCAGAACGAGCCAGAGAAAAAT 1019 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATC--ATTATGAA 46807 |||||||| |||||||| || ||||| || | |||| || | | | | ||| Sbjct 1020 ATGCCTTCGACAGCCGCAAACGCGACGAG-----CCGCGTA---GGGAACGAAGTCTGAC 1071 Query 46808 T-CCA--CCTTTGA---GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 | ||| || || | ||||| | |||||||||| | ||| || || || ||| | Sbjct 1072 TGCCAATCCATTCAATCGCCCATTTGGCCTTTTTCTCAATACACGGAATCGTCCTTATGG 1131 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAA--GACT 46919 ||| | || | ||||| || ||| |||||| ||||| || || | || | Sbjct 1132 CATGTAGCAGTCGTTGCTTTTCGTCGGGATCCACAACATACGTATCGATCAACACGGAGT 1191 Query 46920 ATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 46979 || | || ||||| || ||||| ||||| ||||| || || || ||||||| |||| Sbjct 1192 AT--GTCTCAGAATGGATATTTTCCATAGCAATCTGGAACCCATAGAAACATCGAACTTC 1249 Query 46980 AGTAATCTGTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCAC 47038 || | ||| || || | ||| || ||||| | | ||||| ||| || ||||| | Sbjct 1250 AGGTACCTGCACTTC-GCACATGAACCGTTCCGCAAGGTTCTCCAGCACAATGCCATCGC 1308 Query 47039 TAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGT-CAGTTTA 47097 | || || || || ||||| |||||||| || || | | || | || || ||| || Sbjct 1309 TTGCCGCGAAGAAAGCCAACACATGTTTGATGAAGTGTCGCTC-GCCGTCGTCCAGCTTC 1367 Query 47098 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC-CTC 47156 | ||| || | || || || | || | ||| || | |||||| ||| || ||| Sbjct 1368 TCCCAATCTGTCATGTCATTCCCAAGGTCGATTTCCTCCACCGTCCAG-ATGCTGCTCTC 1426 Query 47157 TGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAAC 47207 || | || ||| | | |||||| ||| | || | ||| || || ||||| Sbjct 1427 CGCCTCCTTGTACTTCTGCCATATGTCAGGGTACTTGATAGGGAAGATAAC 1477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712916344936320