Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1149 145 2e-29 seq763 96.9 7e-15 >seq1149 Length=36903 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| |||||||| || | || || || || ||||||||||| || Sbjct 9601 ACCACCTCGAAGGCGGAGTACCAGGTGCAGTGTCGACTCCTTCTGAATGTTGTAGTCCGC 9660 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||| || ||||| | || ||||||||||| ||||| || || || || || Sbjct 9661 AAGCGTGCGACCCTCCTCCAACTGCTTCCCGGCAAAAATCAACCGCTGCTGATCCGGAGG 9720 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| || |||||| | || || ||||| || || || Sbjct 9721 GATACCCTCCTTGTCCTGAATCTTGGCCTTTACGTTCTCAATGGTGTCGCTGGCCTCAAC 9780 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||| || || || || || | || || ||||| |||||||| Sbjct 9781 CTCAAGAGCAATGGTTTTGCCAGTGAGGGTTTTCACGAAGATCTGCAT 9828 >seq763 Length=1889 Score = 96.9 bits (106), Expect = 7e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||||||||| || | ||| ||| | || || |||||| || | || ||| Sbjct 814 GAGTTCATTTGCGATGCATTACCTGTCCGCTTAATTGGAATGAATTCTCAGCTGATGACT 755 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || || || || || || ||||| | | ||| | | |||||||| || Sbjct 754 CAGTACATTGAGTTTGTCGCCGATCGGCTCCTGGTGTCCTTGGGGTACGACCGTCATTAC 695 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||||| |||||||| || | || ||||| | ||||| || ||||||||||||||||| Sbjct 694 AACTCGAAGAACCCATTTGACTTCATGGATATGATTTCTCTTCAGGGGAAAACTAACTTT 635 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||| ||| || | || ||||| | | | ||||| Sbjct 634 TTCGAGAAGAAGGTTGGTGAGTATCAGAAGGCTGGTGT 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046712028613004