Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1149 129 1e-24 >seq1149 Length=36903 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| ||||| || ||||| || | || ||||| || | ||| Sbjct 9825 CAGATCTTCGTGAAAACCCTCACTGGCAAAACCATTGCTCTTGAGGTTGAGGCCAGCGAC 9766 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || |||||||||||||| || || ||||||||||| ||||| Sbjct 9765 ACCATTGAGAACGTAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCGGATCAGCAG 9706 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || ||| | || || || | || ||||| || || ||| | Sbjct 9705 CGGTTGATTTTTGCCGGGAAGCAGTTGGAGGAGGGTCGCACGCTTGCGGACTACAACATT 9646 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || |||||||| || || Sbjct 9645 CAGAAGGAGTCGACACTGCACCTGGT 9620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203699953395044