Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20equiperdum_20[genbank_20GCA_5F001457755.2_202016-12- 15] 2,026 sequences; 26,228,029 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1149 111 1e-19 >seq1149 Length=36903 Score = 111 bits (122), Expect = 1e-19 Identities = 169/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| || || || || || | ||||| ||||| || ||||||||||||||| | Sbjct 9595 CATCACA-CCACCTCGAAGGCGGAGTACCAGGTGCAGTGTCGACTCCTTCTGAATGTTGT 9653 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| | || ||||| | || || | |||||| ||||| || |||| ||||| || | Sbjct 9654 AGTCCGCAAGCGTGCGACCCTCCTCCAACTGCTTCCCGGCAAAAATCAACCGCTGCTGAT 9713 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTC 41806 ||| || | | |||||||||| ||| | || || | ||| | | |||||||| Sbjct 9714 CCGGAGGGATACCCTCCTTGTCC-TGAATCTTGGCCTTTACGTTCTCAATGGTGTCGCTG 9772 Query 41807 GACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||| ||||| | | || ||||| || || || || || ||||| ||||||||| Sbjct 9773 GCCTCAACCTCAAGAGCAATGGTTTTGCCAGTGAGGGTTTTCACGAAGATCTGCATG 9829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292292151200