Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq464 100 6e-16 seq1853 84.2 5e-11 seq724 84.2 5e-11 seq139 84.2 5e-11 >seq464 Length=13466 Score = 100 bits (110), Expect = 6e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 281735 CAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCC 281794 |||||| |||||||| || | || ||| ||||| |||||| ||||| | | ||| || Sbjct 1519 CAGTTTTGTGAAGATGTAGCGTGGGGCCGCATGGTCGTTACCAACCTGCTGACGCGAACC 1578 Query 281795 AAACTGACCCTCCGGCAACAACCA-GTTAATGTTATTGCTCCCGACGTAATCCTGAGCCA 281853 ||||||||||||||| |||| || ||| ||||| || | || | | | ||| |||| Sbjct 1579 GAACTGACCCTCCGGC-ACAAGCAGGTTGATGTTGTTACCACCCGTGAAGTTCTGTGCCA 1637 Query 281854 GGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCG 281900 || | || ||| |||| ||||| |||||||| ||||| ||||| Sbjct 1638 TTTTAATCATCGTCTCCTGCAGCGAGACCTCACCATGGTGGAAGGCG 1684 >seq1853 Length=1862 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||| |||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 463 GCCCTTCTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGC 404 Query 165770 CCCACG 165775 |||||| Sbjct 403 CCCACG 398 >seq724 Length=8751 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||| |||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 492 GCCCTTCTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGC 433 Query 165770 CCCACG 165775 |||||| Sbjct 432 CCCACG 427 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||| |||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 569 GCCCTTCTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGC 510 Query 165770 CCCACG 165775 |||||| Sbjct 509 CCCACG 504 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||| |||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 697 GCCCTTCTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGC 756 Query 165770 CCCACG 165775 |||||| Sbjct 757 CCCACG 762 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||| |||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 8415 GCCCTTCTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGC 8356 Query 165770 CCCACG 165775 |||||| Sbjct 8355 CCCACG 8350 >seq139 Length=28517 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||| |||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 19866 GCCCTTCTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGC 19807 Query 165770 CCCACG 165775 |||||| Sbjct 19806 CCCACG 19801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057785088274730