Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq78 138 1e-27 >seq78 Length=36107 Score = 138 bits (152), Expect = 1e-27 Identities = 284/415 (68%), Gaps = 13/415 (3%) Strand=Plus/Plus Query 16238 ATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATC 16297 || ||||| ||| || || | ||||||||| || || ||||| | |||||| | | Sbjct 13173 ATGAGTTCATTGCTGAACGTCAGCCCTGGCATGAGGCCACGCTTCTTGAGCCAGAACAGC 13232 Query 16298 GCAGCA-AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356 || ||| || || || || ||||| || |||||||||| ||||| |||| | || || Sbjct 13233 GC-GCAGAACGAGCCGGAGAAGAAGATGCCCTCAACAGCGGCAAACGCGACAAGGCGCTC 13291 Query 16357 CGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTAT 16416 || | | || | | || ||||| || | |||| | ||||| | | || Sbjct 13292 AGCAAA---ACACTCGCTGCTGCGGATCCACTTAGTTGCCCACTTAGCTTTCTTCTCAAT 13348 Query 16417 ACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTC--CTGAATATCGATTATA 16474 || || ||| ||||| | |||||| || ||||| ||| | || | || Sbjct 13349 GCACGGGATAGTTGAGATGGCGTGAAACAAGCGGTCCTTTTCGACTG--TGTCCGTGATG 13406 Query 16475 TACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAAT 16534 || || || | ||| | | |||||| || ||||| | |||||| ||||| ||||| || Sbjct 13407 TAAGTGTCCAGCAGAACAGAGTACATCTCAGAGTGCACGTTCTCGATGGCGATCTGGAAC 13466 Query 16535 CCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAA--AATCGTTCCGCCAGGT 16592 ||||||||||| || |||||| | || || || ||| | || || | ||||||| Sbjct 13467 CCATAGAAGCAGCGCACCTCCGGTGACTGCACCTC--CGTCATGAACCGCTGTGCCAGGT 13524 Query 16593 TCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||| |||||| || |||||||| |||||||| ||||| | |||||| ||||| Sbjct 13525 TCTCCAGCACGATCCCATCACTTGCGGCAAAAAATGCCAACACGTGCTTGATGAA 13579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511396046615720