Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1674 210 3e-49 >seq1674 Length=2441 Score = 210 bits (232), Expect = 3e-49 Identities = 442/654 (68%), Gaps = 9/654 (1%) Strand=Plus/Minus Query 145686 GGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGG 145745 |||||||||||||||| ||| |||||||| || || || ||| | | || || || Sbjct 2273 GGGCTCCACGTGGTTGGAGTACACGTGCGCATCGCCGAGCGTGTGCACCAGCTCGCCCGG 2214 Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 | | |||| | || | | | |||||||| | ||| || |||||||| Sbjct 2213 CCGCAATCCCGCCGCCTTCGCCATGAGGATCGTCAGCAGCGCGTACGACGCGATGTTGAA 2154 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 ||||| || || |||||||| | |||||||||||||||| |||||||||||| ||| Sbjct 2153 CGGCACGCCGAGGCCCATGTCGCACGAGCGCTGGTACAGCATGCAGGAGAGCTCGCCGTT 2094 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGC 145925 | |||||||||| ||||||||||| || || || ||||| ||| |||| | Sbjct 2093 GTTCGCGTAGAACTGCGCGAGGAGGTGGCACGGTGGGAGCGCCATCGCGTGCAGCGCGCA 2034 Query 145926 CGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTAT 145985 ||||||||| |||||||| | | | || | ||||||||| | | | | ||| Sbjct 2033 CGGGTTCCACGCGGTGAGTATCATGCGCCGGTCATCGGGGTTCGTGCGCAGCGTCTCTAC 1974 Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTC-CACGTACG 146044 | | || || |||||| | ||| | ||| ||| || ||| | | | | | ||||| Sbjct 1973 GATCTGCCGGATCTGGTCGATGCCATTCCCGGAGTAGTC-GTCGTCGTGCCGCGTGTACG 1915 Query 146045 CGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGT 146104 | || |||||||| | ||||||||| ||||| || || || |||||| ||| || Sbjct 1914 CCGCGCCGAAGTGTCGCCACTGGAAGCCGTACACCGGGCCAAGGTCCATCTCCTCGTAGT 1855 Query 146105 GCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGC 146164 ||||||| | | |||||||| | || || |||||| || |||||| | |||| Sbjct 1854 CGTGCAGCCCGCGGCTGTCGAGGAAGGCGCGCGAGCCGTTGTCGCTCCAGATGTGCACGC 1795 Query 146165 CCCTCGCGGAGAGCTCATTGGAGTCCG--TGGACCCCCTGATGAACCAGAGCAGCTCTTC 146222 || | || ||| || | || || ||| | | | || ||||| |||||||| || Sbjct 1794 CCTTGTCGCTCAGCAGCTTCGCGTTCGTCTGGCCGCGCAGA--AACCACAGCAGCTCCTC 1737 Query 146223 GAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGG---GGAACTGGCCCCGCAG 146279 | || || | ||||||||| | ||| || |||||||| | || | ||| || || Sbjct 1736 GCACACGCCGCGCCAGAAGACGCGCTTCGTCGTCAGCAGCGGCAGGCGATTGCCACGGAG 1677 Query 146280 GGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTC 146333 ||| | ||| | ||||||| ||||| ||||| || || || | ||| Sbjct 1676 CGAGAAACGCATCTGCGCGCCGAAGATCGACAGCGTGCCAACACCTGTGCGGTC 1623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590055623618840